Variant report

Variant	rs3742923
Chromosome Location	chr14:32328164-32328165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10129419	0.86[JPT][hapmap]
rs10135411	0.86[JPT][hapmap]
rs10136892	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10148852	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10150448	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10152018	0.86[JPT][hapmap]
rs10152063	0.80[EUR][1000 genomes]
rs10348	0.80[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11156713	0.86[JPT][hapmap]
rs11156716	0.85[ASN][1000 genomes]
rs1129622	0.80[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1129623	0.85[ASN][1000 genomes]
rs12435286	0.84[CEU][hapmap]
rs12590215	1.00[YRI][hapmap]
rs12590375	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs12590836	0.82[CEU][hapmap]
rs12878072	1.00[YRI][hapmap]
rs12882812	1.00[YRI][hapmap]
rs12884103	1.00[YRI][hapmap]
rs1572190	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17463975	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs1959071	0.82[JPT][hapmap]
rs1959072	0.85[ASN][1000 genomes]
rs2378970	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2890046	0.81[ASN][1000 genomes]
rs35875023	0.80[AMR][1000 genomes]
rs35943743	0.85[ASN][1000 genomes]
rs3825742	0.86[JPT][hapmap]
rs4981130	0.87[JPT][hapmap]
rs4981132	0.86[ASN][1000 genomes]
rs4981133	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4981134	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4981135	0.86[ASN][1000 genomes]
rs4981917	0.81[ASN][1000 genomes]
rs7140475	0.86[ASN][1000 genomes]
rs7141300	0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs7141900	0.85[CEU][hapmap]
rs7145823	0.84[CEU][hapmap]
rs7148271	0.87[JPT][hapmap]
rs7148374	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7158089	0.86[JPT][hapmap]
rs7161640	0.84[EUR][1000 genomes]
rs8003582	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8005663	0.82[JPT][hapmap]
rs8013469	0.84[ASN][1000 genomes]
rs8015328	0.82[JPT][hapmap]
rs8021918	0.85[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs8022995	0.91[JPT][hapmap]
rs8023131	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv901593	chr14:32282564-32350371	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32281800-32330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:32294200-32328800	Weak transcription	Ovary	ovary
3	chr14:32295000-32332800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:32309200-32330000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:32313000-32334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:32313800-32328200	Weak transcription	Gastric	stomach
7	chr14:32314400-32330600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:32322800-32329400	Weak transcription	Primary T cells from cord blood	blood
9	chr14:32327600-32328600	Enhancers	HepG2	liver
10	chr14:32327800-32328200	Enhancers	A549	lung
11	chr14:32327800-32328600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:32328000-32328200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr14:32328000-32328200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr14:32328000-32328600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links