Variant report

Variant rs3743131
Chromosome Location chr15:40557870-40557871
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:40546000-40558400 Weak transcription Brain Anterior Caudate brain
2 chr15:40546000-40558600 Weak transcription Brain Angular Gyrus brain
3 chr15:40546000-40571800 Weak transcription Right Ventricle heart
4 chr15:40546200-40568200 Weak transcription Duodenum Mucosa Duodenum
5 chr15:40546800-40559200 Weak transcription Brain Cingulate Gyrus brain
6 chr15:40550000-40568000 Weak transcription Spleen Spleen
7 chr15:40550400-40566800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr15:40550800-40558200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr15:40551200-40558800 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr15:40551400-40558800 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr15:40551400-40561600 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr15:40551400-40571000 Weak transcription H9 Cell Line embryonic stem cell
13 chr15:40551600-40558200 Weak transcription Placenta Amnion Placenta Amnion
14 chr15:40551600-40558600 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr15:40551600-40560000 Weak transcription H1 Cell Line embryonic stem cell
16 chr15:40551600-40561800 Weak transcription ES-WA7 Cell Line embryonic stem cell
17 chr15:40553800-40558400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr15:40553800-40570400 Strong transcription Breast Myoepithelial Primary Cells Breast
19 chr15:40554800-40559000 Enhancers Hela-S3 cervix
20 chr15:40554800-40559200 Weak transcription Fetal Brain Female brain
21 chr15:40555000-40560600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr15:40555200-40558600 Strong transcription Esophagus oesophagus
23 chr15:40555400-40566600 Weak transcription Brain Inferior Temporal Lobe brain
24 chr15:40555600-40558000 Weak transcription Gastric stomach
25 chr15:40555600-40558800 Weak transcription HSMMtube muscle
26 chr15:40555800-40558000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
27 chr15:40555800-40558600 Weak transcription HSMM muscle
28 chr15:40555800-40558600 Weak transcription NH-A brain
29 chr15:40555800-40558600 Weak transcription NHDF-Ad bronchial
30 chr15:40555800-40558800 Weak transcription Osteobl bone
31 chr15:40556000-40558000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr15:40556000-40558400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr15:40556000-40558400 Weak transcription Brain Germinal Matrix brain
34 chr15:40556000-40558600 Weak transcription Muscle Satellite Cultured Cells --
35 chr15:40556000-40558800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr15:40556000-40558800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr15:40556200-40558400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr15:40556200-40558400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr15:40556200-40558400 Weak transcription Brain Hippocampus Middle brain
40 chr15:40556200-40567400 Strong transcription Fetal Intestine Small intestine
41 chr15:40556200-40567600 Weak transcription Colonic Mucosa Colon
42 chr15:40556800-40558200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr15:40556800-40558400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr15:40556800-40558800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
45 chr15:40557000-40559800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
46 chr15:40557000-40568200 Weak transcription Lung lung
47 chr15:40557200-40558200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr15:40557200-40558400 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr15:40557200-40558400 Strong transcription HMEC breast
50 chr15:40557200-40558800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell

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