Variant report

Variant	rs374367246
Chromosome Location	chr13:97992072-97992073
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97887496..97890340-chr13:97991017..97992548,2	K562	blood:
2	chr13:97985220..97987596-chr13:97990645..97993198,3	K562	blood:
3	chr13:97992068..97993792-chr13:97995269..97997609,2	K562	blood:
4	chr13:97990074..97993792-chr13:97995202..97997609,3	K562	blood:
5	chr13:97907616..97910279-chr13:97990865..97992598,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3398856	chr13:97990623-97992426	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv19901	chr13:97991827-97992339	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
2	chr13:97981000-97998800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:97984000-98000800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr13:97984400-97992400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:97985600-97992800	Strong transcription	HepG2	liver
9	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr13:97986400-97992400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:97986600-97998400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr13:97988000-97992200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:97988200-97992200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr13:97989200-97999000	Weak transcription	Colonic Mucosa	Colon
15	chr13:97989400-97993200	Genic enhancers	Liver	Liver
16	chr13:97989400-97996600	Weak transcription	Fetal Thymus	thymus
17	chr13:97989400-97999200	Weak transcription	NH-A	brain
18	chr13:97989600-97998600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr13:97989600-97999400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr13:97989800-97995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:97990000-97993000	Weak transcription	Hela-S3	cervix
22	chr13:97990000-97995600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr13:97990000-97998600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr13:97990400-97992400	Genic enhancers	Lung	lung
25	chr13:97990400-97992600	Enhancers	Right Atrium	heart
26	chr13:97990600-97994600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr13:97990800-97992200	Enhancers	Aorta	Aorta
28	chr13:97990800-97992600	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr13:97991000-97992400	Enhancers	Colon Smooth Muscle	Colon
30	chr13:97991000-97995200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr13:97991000-97995200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr13:97991000-97995200	Weak transcription	Placenta	Placenta
33	chr13:97991200-97992200	Enhancers	Ovary	ovary
34	chr13:97991200-97992400	Enhancers	Left Ventricle	heart
35	chr13:97991200-97992600	Flanking Active TSS	NHDF-Ad	bronchial
36	chr13:97991200-97995200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr13:97991200-97998800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:97991400-97992400	Enhancers	Duodenum Mucosa	Duodenum
39	chr13:97991400-97992400	Enhancers	Fetal Muscle Leg	muscle
40	chr13:97991400-97992400	Enhancers	Right Ventricle	heart
41	chr13:97991400-97992600	Enhancers	GM12878-XiMat	blood
42	chr13:97991400-97993400	Enhancers	A549	lung
43	chr13:97991400-97995000	Enhancers	Stomach Mucosa	stomach
44	chr13:97991400-97995200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr13:97991400-97995200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr13:97991400-97995400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr13:97991400-97996800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr13:97991400-98002600	Weak transcription	Fetal Brain Female	brain
49	chr13:97991600-97992200	Genic enhancers	Fetal Intestine Small	intestine
50	chr13:97991600-97992200	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links