Variant report

Variant	rs374372468
Chromosome Location	chr8:19822027-19822028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19811879..19814750-chr8:19820326..19823164,2	K562	blood:
2	chr8:19820325..19822189-chr8:19825271..19827083,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890632	chr8:19816371-19853146	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515694	chr8:19821233-19824896	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19798600-19824200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:19800800-19823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:19805000-19824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:19805800-19824600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:19811800-19822400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:19811800-19826000	Weak transcription	Brain Germinal Matrix	brain
7	chr8:19813600-19823000	Weak transcription	Fetal Brain Male	brain
8	chr8:19814800-19822800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:19817000-19824800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:19818400-19822800	Strong transcription	Fetal Lung	lung
11	chr8:19819600-19822200	Strong transcription	Right Ventricle	heart
12	chr8:19820000-19822200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:19820000-19822600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:19820000-19823600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:19820200-19824000	Strong transcription	Left Ventricle	heart
16	chr8:19820400-19822600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:19820400-19825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:19820600-19822800	Weak transcription	Fetal Heart	heart
19	chr8:19820600-19824800	Strong transcription	Adipose Nuclei	Adipose
20	chr8:19820600-19824800	Weak transcription	Ovary	ovary
21	chr8:19820600-19825000	Weak transcription	Lung	lung
22	chr8:19820600-19833400	Weak transcription	Psoas Muscle	Psoas
23	chr8:19820800-19822200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:19821000-19823600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr8:19821000-19826200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr8:19821800-19824000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr8:19822000-19823200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:19822000-19823200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr8:19822000-19823800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links