Variant report

Variant	rs374388878
Chromosome Location	chr6:88257575-88257576
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88256344..88258160-chr6:88260668..88262336,2	K562	blood:
2	chr6:88257019..88262069-chr6:88262854..88269707,6	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3369425	chr6:88257382-88257925	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
2	chr6:88227800-88298800	Weak transcription	Esophagus	oesophagus
3	chr6:88228400-88298400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:88228600-88262800	Weak transcription	Small Intestine	intestine
5	chr6:88228600-88271400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:88228600-88285200	Weak transcription	Spleen	Spleen
7	chr6:88228800-88269600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:88229400-88261600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:88229400-88271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:88229600-88289000	Weak transcription	Lung	lung
11	chr6:88230000-88267000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:88230400-88271200	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:88230800-88261600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:88231200-88262800	Weak transcription	Brain Angular Gyrus	brain
15	chr6:88231200-88264200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:88240600-88268200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:88249000-88259600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:88249000-88265600	Strong transcription	HepG2	liver
19	chr6:88249400-88263600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:88249600-88259000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:88250000-88275200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:88250400-88262600	Weak transcription	HMEC	breast
23	chr6:88250600-88259000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:88250600-88260000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:88250600-88270800	Weak transcription	Fetal Heart	heart
26	chr6:88250600-88276800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:88250600-88281600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr6:88250800-88260200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:88250800-88270400	Weak transcription	Pancreas	Pancrea
30	chr6:88251000-88260200	Strong transcription	Fetal Thymus	thymus
31	chr6:88251000-88281800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:88251000-88291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:88251200-88258000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:88251200-88262600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:88251200-88263400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:88251200-88270800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:88251200-88271200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:88251200-88275200	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr6:88251200-88280000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:88251200-88280600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:88251200-88284800	Weak transcription	Stomach Mucosa	stomach
42	chr6:88251800-88261600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:88251800-88262600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:88251800-88263000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:88252000-88260200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:88252200-88263000	Weak transcription	A549	lung
47	chr6:88252800-88258400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:88253000-88258800	Strong transcription	Adipose Nuclei	Adipose
49	chr6:88253200-88259400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:88253400-88257600	Strong transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links