Variant report

Variant	rs374420020
Chromosome Location	chr6:165342938-165342939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3323305	chr6:165342462-165347460	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165333200-165346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:165340800-165344000	Active TSS	Brain Anterior Caudate	brain
3	chr6:165341200-165343000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:165341200-165343200	Active TSS	Fetal Brain Female	brain
5	chr6:165341600-165343200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:165341600-165343200	Active TSS	Brain Substantia Nigra	brain
7	chr6:165341800-165343400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr6:165342200-165343000	Enhancers	HSMM	muscle
9	chr6:165342200-165343200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:165342200-165343400	Enhancers	Fetal Muscle Leg	muscle
11	chr6:165342600-165343000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:165342600-165343200	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr6:165342600-165343200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:165342600-165343400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:165342800-165343000	Active TSS	Brain Germinal Matrix	brain
16	chr6:165342800-165343200	Flanking Active TSS	Brain Angular Gyrus	brain
17	chr6:165342800-165343400	Flanking Active TSS	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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