Variant report

Variant	rs374420745
Chromosome Location	chr9:71939245-71939246
allele	-/TCTTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr9:71939215-71940286	HCT-116	colon:	n/a	chr9:71940260-71940269
2	CHD1	chr9:71939130-71939630	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr9:71939176-71940373	H1-hESC	embryonic stem cell:	n/a	n/a
4	E2F6	chr9:71939189-71940270	H1-hESC	embryonic stem cell:	n/a	chr9:71939929-71939940 chr9:71940063-71940073
5	HA-E2F1	chr9:71939219-71940234	MCF-7	breast:	n/a	chr9:71939929-71939940 chr9:71940063-71940073

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71937269..71941011-chr9:72000572..72004392,4	MCF-7	breast:
2	chr9:71938510..71941284-chr9:71942079..71947019,4	MCF-7	breast:

Variant related genes	Relation type
FAM189A2	TF binding region
ENSG00000135063	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv893428	chr9:71926658-72027641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3374800	chr9:71939157-71942005	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1041094	chr9:71939246-71939247	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71935800-71939400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:71935800-71939400	Weak transcription	Brain Angular Gyrus	brain
3	chr9:71937600-71942800	Active TSS	Fetal Heart	heart
4	chr9:71937800-71939400	Weak transcription	Hela-S3	cervix
5	chr9:71938000-71939400	Weak transcription	Pancreas	Pancrea
6	chr9:71938800-71939400	Active TSS	Brain Cingulate Gyrus	brain
7	chr9:71938800-71939400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:71938800-71940800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:71938800-71940800	Active TSS	Brain Substantia Nigra	brain
10	chr9:71938800-71941400	Active TSS	Brain Anterior Caudate	brain
11	chr9:71938800-71942800	Active TSS	Right Atrium	heart
12	chr9:71939000-71939400	Bivalent/Poised TSS	Fetal Stomach	stomach
13	chr9:71939000-71940600	Bivalent/Poised TSS	Fetal Lung	lung
14	chr9:71939000-71940800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr9:71939000-71941000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr9:71939000-71941000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr9:71939000-71941200	Active TSS	Ovary	ovary
18	chr9:71939000-71941400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr9:71939000-71942800	Active TSS	Stomach Smooth Muscle	stomach
20	chr9:71939200-71939400	Active TSS	H1 Cell Line	embryonic stem cell
21	chr9:71939200-71939400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr9:71939200-71939400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr9:71939200-71939400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
24	chr9:71939200-71939400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:71939200-71939400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:71939200-71939400	Active TSS	Adipose Nuclei	Adipose
27	chr9:71939200-71939400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr9:71939200-71939400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
29	chr9:71939200-71939400	Bivalent Enhancer	Rectal Smooth Muscle	rectum
30	chr9:71939200-71939400	Active TSS	Right Ventricle	heart
31	chr9:71939200-71939400	Enhancers	HMEC	breast
32	chr9:71939200-71939600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:71939200-71939600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr9:71939200-71939800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr9:71939200-71940000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
36	chr9:71939200-71940600	Active TSS	Brain Hippocampus Middle	brain
37	chr9:71939200-71940600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr9:71939200-71940800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
39	chr9:71939200-71940800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:71939200-71941000	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr9:71939200-71941200	Active TSS	H9 Cell Line	embryonic stem cell
42	chr9:71939200-71941400	Active TSS	Left Ventricle	heart
43	chr9:71939200-71944000	Active TSS	Breast Myoepithelial Primary Cells	Breast

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