Variant report

Variant	rs37443
Chromosome Location	chr5:106907339-106907340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:106892887..106893840-chr5:106907159..106908105,3	MCF-7	breast:
2	chr5:106907249..106908833-chr5:107002242..107004376,2	MCF-7	breast:
3	chr5:106905731..106907400-chr5:106990438..106992005,2	MCF-7	breast:
4	chr5:106901247..106903878-chr5:106904972..106907899,2	MCF-7	breast:
5	chr5:106906707..106911009-chr5:107006315..107009316,7	MCF-7	breast:
6	chr5:106900235..106903223-chr5:106906365..106909142,2	MCF-7	breast:
7	chr5:106907050..106909866-chr5:106911029..106913761,2	K562	blood:
8	chr5:106892732..106894780-chr5:106905929..106907820,4	MCF-7	breast:
9	chr5:106906689..106910307-chr5:107006069..107011101,9	MCF-7	breast:
10	chr5:106903381..106905654-chr5:106906317..106907997,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs164844	0.82[ASN][1000 genomes]
rs164846	0.82[ASN][1000 genomes]
rs164848	0.80[ASN][1000 genomes]
rs164972	0.88[ASN][1000 genomes]
rs168501	0.80[ASN][1000 genomes]
rs354182	0.80[ASN][1000 genomes]
rs608333	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106899400-106915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:106902200-106907400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:106902400-106907600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:106902600-106907400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:106905400-106907400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:106905400-106907400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:106905600-106907800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:106905600-106909000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:106905800-106907400	Enhancers	Placenta	Placenta
10	chr5:106905800-106907400	Enhancers	Fetal Stomach	stomach
11	chr5:106905800-106907600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:106905800-106907800	Flanking Active TSS	GM12878-XiMat	blood
13	chr5:106905800-106908000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:106905800-106909000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:106906000-106907400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:106906000-106907400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr5:106906000-106907400	Enhancers	Fetal Brain Male	brain
18	chr5:106906000-106907400	Enhancers	Fetal Kidney	kidney
19	chr5:106906000-106907600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:106906000-106907800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:106906000-106908200	Flanking Active TSS	Dnd41	blood
22	chr5:106906000-106908600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:106906400-106907400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr5:106906600-106907400	Enhancers	Primary B cells from peripheral blood	blood
25	chr5:106906600-106907400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr5:106906600-106907400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:106906600-106907400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr5:106906600-106907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr5:106906600-106907400	Enhancers	Pancreas	Pancrea
30	chr5:106906600-106907800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:106906600-106907800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:106906600-106907800	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr5:106906600-106908000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:106906600-106908200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr5:106906600-106908200	Enhancers	Spleen	Spleen
36	chr5:106906600-106908200	Flanking Active TSS	NHEK	skin
37	chr5:106906600-106908400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:106906600-106908400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:106906600-106909000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:106906800-106907400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:106906800-106907400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
42	chr5:106906800-106907400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr5:106906800-106907400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr5:106906800-106907400	Active TSS	Colonic Mucosa	Colon
45	chr5:106906800-106907400	Enhancers	Fetal Muscle Trunk	muscle
46	chr5:106906800-106907400	Enhancers	Lung	lung
47	chr5:106906800-106907600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr5:106906800-106907600	Flanking Active TSS	Fetal Intestine Small	intestine
49	chr5:106906800-106907600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr5:106906800-106907800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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