Variant report

Variant	rs37444
Chromosome Location	chr5:106906533-106906534
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:106905731..106907400-chr5:106990438..106992005,2	MCF-7	breast:
2	chr5:106803456..106805007-chr5:106904785..106907231,2	K562	blood:
3	chr5:106901247..106903878-chr5:106904972..106907899,2	MCF-7	breast:
4	chr5:106900235..106903223-chr5:106906365..106909142,2	MCF-7	breast:
5	chr5:106892732..106894780-chr5:106905929..106907820,4	MCF-7	breast:
6	chr5:106903381..106905654-chr5:106906317..106907997,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs164699	0.89[ASN][1000 genomes]
rs37447	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106887200-106906800	Weak transcription	Right Ventricle	heart
2	chr5:106895000-106906800	Weak transcription	Lung	lung
3	chr5:106899400-106907000	Enhancers	Fetal Heart	heart
4	chr5:106899400-106915600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:106900200-106906800	Weak transcription	Aorta	Aorta
6	chr5:106900800-106906800	Weak transcription	HSMM	muscle
7	chr5:106901000-106906600	Weak transcription	Adipose Nuclei	Adipose
8	chr5:106901200-106906600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:106901400-106906800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:106901600-106906800	Enhancers	HMEC	breast
11	chr5:106902000-106906600	Weak transcription	Fetal Muscle Leg	muscle
12	chr5:106902000-106906600	Weak transcription	Left Ventricle	heart
13	chr5:106902000-106906800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr5:106902000-106906800	Weak transcription	Ovary	ovary
15	chr5:106902000-106907000	Weak transcription	Osteobl	bone
16	chr5:106902200-106907000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:106902200-106907200	Weak transcription	NHLF	lung
18	chr5:106902200-106907400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:106902400-106906600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:106902400-106906800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:106902400-106906800	Weak transcription	Colon Smooth Muscle	Colon
22	chr5:106902400-106907600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:106902600-106906600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:106902600-106907400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr5:106902800-106906800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:106903000-106906600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:106903200-106906600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr5:106903400-106907200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:106904200-106906600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:106904200-106906800	Enhancers	HUVEC	blood vessel
31	chr5:106904400-106906600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:106904400-106906600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:106905400-106906800	Enhancers	Stomach Mucosa	stomach
34	chr5:106905400-106907200	Enhancers	Brain Germinal Matrix	brain
35	chr5:106905400-106907400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr5:106905400-106907400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr5:106905600-106906600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr5:106905600-106906600	Enhancers	Duodenum Mucosa	Duodenum
39	chr5:106905600-106906800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr5:106905600-106906800	Flanking Active TSS	A549	lung
41	chr5:106905600-106907000	Enhancers	Placenta Amnion	Placenta Amnion
42	chr5:106905600-106907200	Enhancers	Fetal Brain Female	brain
43	chr5:106905600-106907200	Enhancers	Fetal Intestine Large	intestine
44	chr5:106905600-106907200	Enhancers	Fetal Lung	lung
45	chr5:106905600-106907800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:106905600-106909000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr5:106905800-106906600	Enhancers	Rectal Smooth Muscle	rectum
48	chr5:106905800-106906600	Enhancers	NHEK	skin
49	chr5:106905800-106906800	Enhancers	Fetal Intestine Small	intestine
50	chr5:106905800-106906800	Enhancers	Pancreatic Islets	Pancreatic Islet

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