Variant report

Variant	rs374441703
Chromosome Location	chr3:139924471-139924472
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1008578	chr3:139907172-139942453	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1003141	chr3:139907434-139942453	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv18274	chr3:139923606-139924666	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139921600-139925600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:139921600-139926000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:139921600-139926200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:139921800-139925400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:139922000-139926000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:139922400-139925400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:139923200-139926400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:139923400-139924600	Weak transcription	Fetal Brain Female	brain
9	chr3:139923600-139925400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:139923800-139924800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:139923800-139925800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:139923800-139926000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:139924000-139925200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:139924000-139925200	Enhancers	Ovary	ovary
15	chr3:139924000-139926000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:139924200-139925600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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