Variant report

Variant	rs374450023
Chromosome Location	chr5:49409558-49409559
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334856	chr5:49405642-49442693	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
2	esv3353509	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3365495	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
4	esv3403552	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3451841	chr5:49405642-49442693	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	esv997367	chr5:49405763-49441191	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv17894	chr5:49405763-49442098	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
8	esv19415	chr5:49405763-49485157	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv820439	chr5:49405763-49552643	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv15107	chr5:49405763-49562327	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv6051	chr5:49405841-49436199	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv598085	chr5:49406720-49439390	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv3382902	chr5:49407431-49439369	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
14	nsv598086	chr5:49409485-49437600	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
15	nsv598087	chr5:49409485-49441601	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:49406000-49409600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:49406000-49409600	Weak transcription	Fetal Heart	heart
3	chr5:49406000-49409600	Weak transcription	Left Ventricle	heart
4	chr5:49406000-49409600	Weak transcription	Right Ventricle	heart
5	chr5:49406000-49409600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:49406000-49410600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:49406000-49413800	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:49406000-49413800	Weak transcription	Stomach Mucosa	stomach
9	chr5:49406000-49414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:49406000-49414200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:49406000-49414200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr5:49406000-49414200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:49406000-49414200	Weak transcription	Aorta	Aorta
14	chr5:49406000-49414200	Weak transcription	Brain Angular Gyrus	brain
15	chr5:49406000-49414200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:49406000-49414200	Weak transcription	Brain Substantia Nigra	brain
17	chr5:49406000-49414200	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:49406000-49414200	Weak transcription	Pancreas	Pancrea
19	chr5:49406000-49414200	Weak transcription	Psoas Muscle	Psoas
20	chr5:49406000-49414200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr5:49406000-49414200	Weak transcription	Thymus	Thymus
22	chr5:49406000-49414200	Weak transcription	Dnd41	blood
23	chr5:49406000-49414200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr5:49406000-49414200	Weak transcription	NH-A	brain
25	chr5:49406000-49414400	Weak transcription	HSMMtube	muscle
26	chr5:49406200-49414200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:49407600-49413800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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