Variant report

Variant	rs3744503
Chromosome Location	chr17:66595732-66595733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2907385	0.91[CEU][hapmap];0.81[MEX][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3744503	ABCA9	cis	parietal	SCAN
rs3744503	ABCA6	cis	parietal	SCAN
rs3744503	ICAM2	cis	parietal	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66589400-66595800	Weak transcription	Brain Angular Gyrus	brain
2	chr17:66589600-66595800	Weak transcription	Ovary	ovary
3	chr17:66591400-66595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:66591400-66595800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr17:66593000-66595800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr17:66593000-66595800	Weak transcription	Left Ventricle	heart
7	chr17:66593000-66595800	Weak transcription	Right Ventricle	heart
8	chr17:66593000-66596000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr17:66593800-66595800	Active TSS	Placenta	Placenta
10	chr17:66593800-66597800	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr17:66594000-66598000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr17:66594200-66596400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr17:66594200-66597600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr17:66594200-66597600	Active TSS	Liver	Liver
15	chr17:66594400-66596000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
16	chr17:66594600-66597800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr17:66594800-66597800	Bivalent/Poised TSS	Thymus	Thymus
18	chr17:66594800-66598000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr17:66595000-66596000	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr17:66595000-66597600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:66595000-66597800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr17:66595200-66595800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr17:66595200-66595800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr17:66595200-66595800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr17:66595200-66595800	Bivalent Enhancer	Fetal Lung	lung
26	chr17:66595200-66595800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
27	chr17:66595200-66596000	Active TSS	Brain Hippocampus Middle	brain
28	chr17:66595200-66596200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr17:66595200-66596400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
30	chr17:66595200-66597400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr17:66595200-66597600	Active TSS	Fetal Kidney	kidney
32	chr17:66595200-66597800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr17:66595200-66598000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
34	chr17:66595400-66595800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
35	chr17:66595400-66595800	Active TSS	Stomach Mucosa	stomach
36	chr17:66595400-66596200	Active TSS	Fetal Heart	heart
37	chr17:66595400-66596200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
38	chr17:66595400-66597800	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr17:66595600-66595800	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr17:66595600-66595800	Enhancers	Brain Substantia Nigra	brain
41	chr17:66595600-66595800	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr17:66595600-66595800	Bivalent/Poised TSS	Fetal Stomach	stomach
43	chr17:66595600-66595800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
44	chr17:66595600-66596000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr17:66595600-66596000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
46	chr17:66595600-66596000	Flanking Active TSS	NHDF-Ad	bronchial
47	chr17:66595600-66596200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr17:66595600-66596200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr17:66595600-66596200	Flanking Active TSS	Osteobl	bone
50	chr17:66595600-66596600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

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