Variant report

Variant	rs374465097
Chromosome Location	chr8:67688201-67688202
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67623840..67628206-chr8:67684536..67689963,10	MCF-7	breast:
2	chr8:67687366..67688870-chr8:67714479..67716823,2	MCF-7	breast:
3	chr8:67679426..67682850-chr8:67685212..67688509,3	MCF-7	breast:
4	chr8:67624145..67628067-chr8:67684003..67690579,11	MCF-7	breast:
5	chr14:20922332..20925092-chr8:67686115..67688747,2	MCF-7	breast:
6	chr8:67679605..67685169-chr8:67685347..67688416,6	MCF-7	breast:
7	chr8:67686161..67689126-chr8:67837035..67839189,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction
ENSG00000092094	Chromatin interaction
ENSG00000245910	Chromatin interaction
ENSG00000213005	Chromatin interaction
ENSG00000100823	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3405382	chr8:67686223-67688771	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	esv2062022	chr8:67687913-67688322	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67686400-67688400	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr8:67686400-67688400	Active TSS	Colonic Mucosa	Colon
3	chr8:67686400-67688400	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr8:67686400-67688400	Active TSS	Right Atrium	heart
5	chr8:67686400-67688600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr8:67686400-67688600	Active TSS	Stomach Smooth Muscle	stomach
7	chr8:67686400-67688800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr8:67686400-67689200	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr8:67686600-67688400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:67686600-67688400	Active TSS	Muscle Satellite Cultured Cells	--
11	chr8:67686600-67688400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:67686600-67688400	Active TSS	Aorta	Aorta
13	chr8:67686600-67688400	Active TSS	Brain Anterior Caudate	brain
14	chr8:67686600-67688400	Active TSS	Brain Hippocampus Middle	brain
15	chr8:67686600-67688400	Active TSS	Ovary	ovary
16	chr8:67686600-67688600	Active TSS	H9 Cell Line	embryonic stem cell
17	chr8:67686600-67688600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:67686600-67688600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:67686600-67688600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:67686600-67688600	Active TSS	Psoas Muscle	Psoas
21	chr8:67686600-67688600	Active TSS	Rectal Smooth Muscle	rectum
22	chr8:67686800-67688400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:67686800-67688400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:67686800-67688400	Active TSS	Brain Angular Gyrus	brain
25	chr8:67686800-67688400	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr8:67686800-67688400	Active TSS	Stomach Mucosa	stomach
27	chr8:67686800-67688800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr8:67686800-67689000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr8:67686800-67689000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:67687000-67688400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:67687000-67688400	Active TSS	NHEK	skin
32	chr8:67687000-67688600	Active TSS	Brain Substantia Nigra	brain
33	chr8:67687000-67689200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:67687800-67688400	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr8:67687800-67688400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:67687800-67688400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
37	chr8:67687800-67688400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:67687800-67688400	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr8:67687800-67688400	Flanking Bivalent TSS/Enh	NH-A	brain
40	chr8:67687800-67688600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:67687800-67688600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:67687800-67688600	Flanking Active TSS	Liver	Liver
43	chr8:67687800-67688600	Flanking Active TSS	K562	blood
44	chr8:67687800-67702600	Weak transcription	Spleen	Spleen
45	chr8:67688000-67688400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr8:67688000-67688400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
47	chr8:67688000-67688400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:67688000-67688400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:67688000-67688400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr8:67688000-67688400	Flanking Active TSS	Primary T cells from cord blood	blood

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