Variant report

Variant	rs374512678
Chromosome Location	chr6:129058512-129058513
allele	-/TGTG/TGTGTG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830801	chr6:128878436-129064667	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3418975	chr6:129058449-129058658	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129045200-129062000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:129056200-129058600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:129058000-129058600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:129058000-129058600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:129058000-129058600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:129058200-129059200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:129058400-129064000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:129058400-129064000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:129058400-129065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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