Variant report

Variant	rs374530062
Chromosome Location	chrX:77254013-77254014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369442	chrX:76969046-77309072	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv529299	chrX:77040316-77947157	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv532880	chrX:77085352-77769755	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	esv3404229	chrX:77123346-77309072	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv529237	chrX:77226910-77294511	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2758575	chrX:77226910-77309072	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv2758874	chrX:77226910-77309072	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv917070	chrX:77250619-77294719	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:77218200-77289000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:77224000-77268200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chrX:77229200-77302200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chrX:77242400-77300600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chrX:77245400-77290800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chrX:77245600-77256400	Weak transcription	Primary T cells from cord blood	blood
7	chrX:77252800-77255200	Weak transcription	Dnd41	blood
8	chrX:77253200-77275200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chrX:77253600-77254200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chrX:77253600-77254400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chrX:77253600-77254400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chrX:77253800-77254400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chrX:77253800-77258400	Weak transcription	Fetal Intestine Small	intestine
14	chrX:77254000-77254200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:77254000-77293200	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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