Variant report

Variant	rs374551699
Chromosome Location	chr19:35848801-35848802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:35848680-35848830	HCT-116	colon:	n/a	n/a
2	CTCF	chr19:35848660-35848810	MCF-7	breast:	n/a	n/a
3	GATA2	chr19:35848623-35849203	SH-SY5Y	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:35848801-35848851	GM19239	blood:	n/a
2	chr19:35848801-35848851	HEK293	kidney:	embryo
3	chr19:35848801-35848851	HepG2	liver:	n/a
4	chr19:35848801-35848851	SAEC	small airway:	n/a
5	chr19:35848801-35848851	LNCaP	prostate:	n/a
6	chr19:35848801-35848851	SKMC	muscle:	n/a
7	chr19:35848801-35848851	HRCEpiC	kidney:	n/a
8	chr19:35848801-35848851	AG09319	gingival:	n/a
9	chr19:35848801-35848851	GM12892	blood:	n/a
10	chr19:35848801-35848851	Jurkat	blood:	n/a
11	chr19:35848801-35848851	HRPEpiC	eye:	n/a
12	chr19:35848801-35848851	AG10803	skin:	n/a
13	chr19:35848801-35848851	SK-N-MC	brain:	n/a
14	chr19:35848801-35848851	Caco-2	colon:	n/a
15	chr19:35848801-35848851	GM06990	blood:	n/a
16	chr19:35848801-35848851	NHDF-neo	bronchial:	n/a
17	chr19:35848801-35848851	K562	blood:	n/a
18	chr19:35848801-35848851	HEEpiC	esophagus:	n/a
19	chr19:35848801-35848851	ProgFib	skin:	n/a
20	chr19:35848801-35848851	SK-N-SH_RA	brain:	n/a
21	chr19:35848801-35848851	AG04450	lung:	fetal
22	chr19:35848801-35848851	PrEC	prostate:	n/a
23	chr19:35848801-35848851	GM12878	blood:	n/a
24	chr19:35848801-35848851	HPAEpiC	pulmonary alveolar:	n/a
25	chr19:35848801-35848851	H1-hESC	embryonic stem cell:	embryo
26	chr19:35848801-35848851	HCM	heart:	n/a
27	chr19:35848801-35848851	HCT-116	colon:	n/a
28	chr19:35848801-35848851	HRE	kidney:	n/a
29	chr19:35848801-35848851	MCF-7	breast:	n/a
30	chr19:35848801-35848851	Hepatocyte	liver:	n/a
31	chr19:35848801-35848851	NH-A	brain:	n/a
32	chr19:35848801-35848851	Hela-S3	cervix:	n/a
33	chr19:35848801-35848851	HUVEC	blood vessel:	n/a
34	chr19:35848801-35848851	PANC-1	pancreas:	n/a
35	chr19:35848801-35848851	IMR90	lung:	fetal
36	chr19:35848801-35848851	CMK	blood:	n/a
37	chr19:35848801-35848851	RPTEC	kidney:	n/a
38	chr19:35848801-35848851	AG04449	skin:	fetal
39	chr19:35848801-35848851	SK-N-SH	brain:	n/a
40	chr19:35848801-35848851	NT2-D1	testis:	n/a
41	chr19:35848801-35848851	NB4	blood:	n/a
42	chr19:35848801-35848851	GM12891	blood:	n/a
43	chr19:35848801-35848851	AG09309	skin:	n/a
44	chr19:35848801-35848851	ECC-1	luminal epithelium:	n/a
45	chr19:35848801-35848851	ovcar-3	ovarian:	n/a
46	chr19:35848801-35848851	A549	lung:	n/a
47	chr19:35848801-35848851	U87	brain:	n/a
48	chr19:35848801-35848851	T-47D	breast:	n/a
49	chr19:35848801-35848851	HNPCEpiC	eye:	n/a
50	chr19:35848801-35848851	HMEC	breast:	n/a

No data

Variant related genes	Relation type
FFAR3	TF binding region
FFAR3	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	esv1828194	chr19:35812566-35865695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1067129	chr19:35827036-35849310	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
10	nsv173	chr19:35837405-35866835	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv2471	chr19:35837405-35903115	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv3399851	chr19:35841723-35854402	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv2762943	chr19:35846150-35861848	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv978808	chr19:35847153-35852217	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv869598	chr19:35847245-35870922	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	esv1818841	chr19:35848339-35863299	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv1819320	chr19:35848565-35865695	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35838200-35849200	Weak transcription	Brain Hippocampus Middle	brain
2	chr19:35844000-35849000	Weak transcription	Ovary	ovary
3	chr19:35844000-35849000	Weak transcription	Spleen	Spleen
4	chr19:35844200-35849000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:35844200-35849000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr19:35844600-35849000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr19:35847200-35852000	Weak transcription	GM12878-XiMat	blood
8	chr19:35848200-35849200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr19:35848200-35849400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr19:35848200-35849600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr19:35848400-35849000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:35848400-35849400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr19:35848400-35849400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr19:35848400-35849400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr19:35848400-35849400	Enhancers	Fetal Muscle Leg	muscle
16	chr19:35848400-35849400	Enhancers	HepG2	liver
17	chr19:35848400-35849600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr19:35848400-35849600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:35848400-35849600	Enhancers	Placenta	Placenta
20	chr19:35848600-35849000	Enhancers	Fetal Lung	lung
21	chr19:35848600-35849200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr19:35848600-35849400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr19:35848600-35849400	Enhancers	Gastric	stomach
24	chr19:35848600-35849400	Enhancers	Pancreas	Pancrea
25	chr19:35848800-35849000	Enhancers	Fetal Intestine Large	intestine
26	chr19:35848800-35849200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr19:35848800-35849200	Enhancers	Fetal Brain Female	brain
28	chr19:35848800-35849200	Enhancers	Fetal Muscle Trunk	muscle
29	chr19:35848800-35849200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
30	chr19:35848800-35849200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr19:35848800-35849400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr19:35848800-35849400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr19:35848800-35849400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr19:35848800-35849400	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr19:35848800-35849400	Enhancers	Liver	Liver
36	chr19:35848800-35849400	Enhancers	Brain Germinal Matrix	brain
37	chr19:35848800-35849400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
38	chr19:35848800-35849400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr19:35848800-35849600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr19:35848800-35849600	Enhancers	Primary hematopoietic stem cells	blood
41	chr19:35848800-35849600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr19:35848800-35849600	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links