Variant report

Variant	rs374581517
Chromosome Location	chr10:48807341-48807342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:48807341-48807391	GM12892	blood:	n/a
2	chr10:48807341-48807391	RPTEC	kidney:	n/a
3	chr10:48807341-48807391	SAEC	small airway:	n/a
4	chr10:48807341-48807391	AG04450	lung:	fetal
5	chr10:48807341-48807391	HAEpiC	amniotic membrane:	n/a
6	chr10:48807341-48807391	SK-N-SH_RA	brain:	n/a
7	chr10:48807341-48807391	BE2_C	brain:	n/a
8	chr10:48807341-48807391	HIPEpiC	eye:	n/a
9	chr10:48807341-48807391	HMEC	breast:	n/a
10	chr10:48807341-48807391	AG09319	gingival:	n/a
11	chr10:48807341-48807391	H1-hESC	embryonic stem cell:	embryo
12	chr10:48807341-48807391	A549	lung:	n/a
13	chr10:48807341-48807391	GM12891	blood:	n/a
14	chr10:48807341-48807391	SK-N-MC	brain:	n/a
15	chr10:48807341-48807391	PFSK-1	brain:	n/a
16	chr10:48807341-48807391	Hepatocyte	liver:	n/a
17	chr10:48807341-48807391	GM06990	blood:	n/a
18	chr10:48807341-48807391	HepG2	liver:	n/a
19	chr10:48807341-48807391	HRPEpiC	eye:	n/a
20	chr10:48807341-48807391	HEEpiC	esophagus:	n/a
21	chr10:48807341-48807391	AG09309	skin:	n/a
22	chr10:48807341-48807391	NB4	blood:	n/a
23	chr10:48807341-48807391	Caco-2	colon:	n/a
24	chr10:48807341-48807391	IMR90	lung:	fetal
25	chr10:48807341-48807391	Hela-S3	cervix:	n/a
26	chr10:48807341-48807391	MCF10A-Er-Src	breast:	n/a
27	chr10:48807341-48807391	HRE	kidney:	n/a
28	chr10:48807341-48807391	ECC-1	luminal epithelium:	n/a
29	chr10:48807341-48807391	T-47D	breast:	n/a
30	chr10:48807341-48807391	NHBE	bronchial:	n/a
31	chr10:48807341-48807391	HL-60	blood:	n/a
32	chr10:48807341-48807391	U87	brain:	n/a
33	chr10:48807341-48807391	SKMC	muscle:	n/a
34	chr10:48807341-48807391	ProgFib	skin:	n/a
35	chr10:48807341-48807391	HCF	heart:	n/a
36	chr10:48807341-48807391	CMK	blood:	n/a
37	chr10:48807341-48807391	AG10803	skin:	n/a
38	chr10:48807341-48807391	HRCEpiC	kidney:	n/a
39	chr10:48807341-48807391	GM19239	blood:	n/a
40	chr10:48807341-48807391	AoSMC	blood vessel:	n/a
41	chr10:48807341-48807391	HNPCEpiC	eye:	n/a
42	chr10:48807341-48807391	NT2-D1	testis:	n/a
43	chr10:48807341-48807391	HUVEC	blood vessel:	n/a
44	chr10:48807341-48807391	SK-N-SH	brain:	n/a
45	chr10:48807341-48807391	NH-A	brain:	n/a
46	chr10:48807341-48807391	AG04449	skin:	fetal
47	chr10:48807341-48807391	GM12878	blood:	n/a
48	chr10:48807341-48807391	HCPEpiC	choroid plexus:	n/a
49	chr10:48807341-48807391	ovcar-3	ovarian:	n/a
50	chr10:48807341-48807391	PrEC	prostate:	n/a

No data

Variant related genes	Relation type
PTPN20B	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758218	chr10:48593396-49299273	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2759748	chr10:48593396-49299273	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1048083	chr10:48663587-49292521	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv895347	chr10:48664066-49299273	Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1041008	chr10:48714571-49287591	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1051932	chr10:48714571-49292521	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1039125	chr10:48714571-49299273	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1045833	chr10:48722696-49292521	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1048052	chr10:48771938-49292521	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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