Variant report

Variant	rs374587
Chromosome Location	chr5:118908476-118908477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10051870	0.93[ASN][1000 genomes]
rs10059784	0.93[ASN][1000 genomes]
rs10155585	0.95[ASN][1000 genomes]
rs12658566	0.84[GIH][hapmap]
rs161857	1.00[CEU][hapmap]
rs2115237	0.82[JPT][hapmap]
rs2162856	0.82[JPT][hapmap]
rs2561513	0.82[JPT][hapmap]
rs2561517	0.81[JPT][hapmap]
rs26183	1.00[CEU][hapmap]
rs328651	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs328667	0.83[ASN][1000 genomes]
rs328694	0.82[JPT][hapmap]
rs328698	0.82[JPT][hapmap]
rs328701	0.82[JPT][hapmap]
rs328704	0.82[JPT][hapmap]
rs328708	0.82[JPT][hapmap]
rs3756512	0.84[GIH][hapmap]
rs491526	1.00[CEU][hapmap]
rs528723	1.00[CEU][hapmap]
rs60093682	0.93[ASN][1000 genomes]
rs7712974	0.87[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7736644	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs919306	0.82[JPT][hapmap]
rs921492	0.80[JPT][hapmap]
rs988464	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv882776	chr5:118859546-118915408	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv882777	chr5:118870452-118981480	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118907600-118909200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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