Variant report

Variant	rs374599577
Chromosome Location	chr4:88300990-88300991
allele	-/ACTATTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88299456..88302215-chr4:88302964..88305080,2	K562	blood:
2	chr4:88300751..88302443-chr4:88312199..88314936,2	K562	blood:

Variant related genes	Relation type
ENSG00000198189	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3363756	chr4:88299828-88302176	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3403991	chr4:88300228-88301776	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88254800-88311800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:88256200-88310600	Weak transcription	Right Ventricle	heart
3	chr4:88257800-88311800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:88267400-88308000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:88267800-88306000	Weak transcription	Fetal Brain Female	brain
6	chr4:88274400-88303400	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:88276200-88311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:88276400-88302800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:88282600-88303200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:88287400-88308000	Weak transcription	Spleen	Spleen
11	chr4:88290400-88305600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:88290800-88301800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:88291000-88306000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:88291000-88309000	Weak transcription	Right Atrium	heart
15	chr4:88293000-88304800	Weak transcription	Brain Germinal Matrix	brain
16	chr4:88293000-88306800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:88293000-88307200	Weak transcription	Pancreas	Pancrea
18	chr4:88293000-88307600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr4:88293000-88308000	Weak transcription	Colonic Mucosa	Colon
20	chr4:88293000-88308800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:88293000-88309600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:88293000-88311200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:88293200-88302000	Weak transcription	Ovary	ovary
24	chr4:88293200-88308000	Weak transcription	Left Ventricle	heart
25	chr4:88293200-88309600	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:88293200-88309600	Weak transcription	Gastric	stomach
27	chr4:88293200-88311400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr4:88293400-88304800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:88293400-88308000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:88293400-88309800	Weak transcription	Brain Anterior Caudate	brain
31	chr4:88294000-88302200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:88294000-88309400	Weak transcription	NHLF	lung
33	chr4:88294000-88309600	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:88294000-88311000	Weak transcription	HSMM	muscle
35	chr4:88294200-88302400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:88294200-88304800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:88294200-88307200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:88294200-88310800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:88294400-88303000	Weak transcription	Fetal Lung	lung
40	chr4:88294600-88308000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:88294800-88302400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:88294800-88303000	Weak transcription	Small Intestine	intestine
43	chr4:88294800-88308000	Weak transcription	Lung	lung
44	chr4:88294800-88309400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:88295000-88302400	Weak transcription	Primary T cells from cord blood	blood
46	chr4:88295000-88305600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr4:88295000-88305800	Weak transcription	Brain Angular Gyrus	brain
48	chr4:88295000-88308000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr4:88295200-88302400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:88295200-88309400	Weak transcription	Stomach Smooth Muscle	stomach

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