Variant report

Variant	rs374621393
Chromosome Location	chr5:69284457-69284458
allele	-/GTATC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERF1B-1	chr5:69282778-69285949	ENSG00000250763.1

Extended variants
information (count: 145 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:145 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32846	chr5:68829015-69705591	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv471498	chr5:68851245-69320933	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1791878	chr5:68914802-69310204	Weak transcription Strong transcription Enhancers	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1795268	chr5:68955543-69681690	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv13923	chr5:68957466-69497579	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv1826478	chr5:68958370-69461956	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv1802173	chr5:68958423-69705657	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv881775	chr5:68963262-69403982	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv881776	chr5:68977250-69405087	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv881777	chr5:68977250-69470589	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv881779	chr5:68991341-69753111	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv881781	chr5:68995989-69420111	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv881785	chr5:69013984-69342745	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv881787	chr5:69025603-69291141	Enhancers Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv881788	chr5:69063595-69470589	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
16	nsv881789	chr5:69075763-69507207	Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
17	nsv881793	chr5:69086881-69342745	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv881794	chr5:69114646-69336461	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv881795	chr5:69114646-69345574	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv881796	chr5:69114646-69535177	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
21	nsv881797	chr5:69123487-69392845	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
22	nsv881798	chr5:69123487-69400453	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
23	nsv881799	chr5:69148904-69400453	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
24	nsv881800	chr5:69148904-69405087	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
25	nsv881801	chr5:69148904-69486566	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv881802	chr5:69154987-69400453	Strong transcription Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
27	nsv881803	chr5:69154987-69403982	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
28	nsv598472	chr5:69154987-69475015	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
29	esv1810000	chr5:69164017-69603075	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
30	nsv598473	chr5:69164101-69397252	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
31	esv19631	chr5:69194688-69411939	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
32	nsv881804	chr5:69197321-69440806	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
33	nsv508367	chr5:69203497-69974573	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
34	esv3344038	chr5:69211346-69292244	Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
35	esv3392165	chr5:69211346-69498644	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
36	esv20207	chr5:69212012-69497694	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
37	nsv881805	chr5:69212209-69392845	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
38	nsv881806	chr5:69212209-69400453	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
39	nsv881807	chr5:69212209-69403982	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
40	nsv881808	chr5:69212209-69420111	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
41	nsv881809	chr5:69212209-69507207	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
42	nsv881810	chr5:69212209-69677532	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
43	esv1850935	chr5:69212708-69464258	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
44	nsv881811	chr5:69215959-69392845	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
45	nsv881812	chr5:69215959-69400453	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
46	nsv881813	chr5:69215959-69470589	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
47	nsv598475	chr5:69215959-69507207	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
48	nsv968927	chr5:69218128-69307038	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
49	esv1826620	chr5:69218852-69477962	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
50	esv1850154	chr5:69218852-69490865	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links