Variant report

Variant	rs374654055
Chromosome Location	chr11:119853505-119853506
allele	-/TGGGG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119846800-119858600	Weak transcription	Fetal Heart	heart
2	chr11:119848400-119854200	Weak transcription	Brain Angular Gyrus	brain
3	chr11:119851400-119855400	Enhancers	Brain Germinal Matrix	brain
4	chr11:119853000-119856200	Enhancers	Brain Substantia Nigra	brain
5	chr11:119853200-119853800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119853200-119853800	Enhancers	Fetal Lung	lung
7	chr11:119853200-119854600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr11:119853200-119855200	Enhancers	Fetal Brain Female	brain
9	chr11:119853200-119855600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:119853200-119856600	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:119853200-119856800	Enhancers	Brain Hippocampus Middle	brain
12	chr11:119853400-119853600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:119853400-119853600	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr11:119853400-119854200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:119853400-119854200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr11:119853400-119854200	Enhancers	Fetal Thymus	thymus
17	chr11:119853400-119854400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:119853400-119854400	Enhancers	Esophagus	oesophagus
19	chr11:119853400-119854400	Enhancers	Fetal Brain Male	brain
20	chr11:119853400-119854600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:119853400-119854600	Enhancers	Adipose Nuclei	Adipose
22	chr11:119853400-119854600	Enhancers	Brain Anterior Caudate	brain

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