Variant report

Variant	rs374683071
Chromosome Location	chr18:9334223-9334224
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:136)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:136 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:9334057-9335234	HUVEC	blood vessel:	n/a	n/a
2	ATF2	chr18:9334168-9334514	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr18:9333875-9335126	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr18:9333966-9335118	IMR90	lung:	n/a	n/a
5	MAX	chr18:9333940-9335195	HepG2	liver:	n/a	n/a
6	SP4	chr18:9333862-9334279	H1-hESC	embryonic stem cell:	n/a	n/a
7	SP1	chr18:9334216-9334789	HepG2	liver:	n/a	chr18:9334483-9334493 chr18:9334482-9334494 chr18:9334482-9334494 chr18:9334483-9334493 chr18:9334527-9334537
8	MAX	chr18:9333973-9335390	HepG2	liver:	n/a	n/a
9	RAD21	chr18:9334207-9334964	ECC-1	luminal epithelium:	n/a	n/a
10	CTCF	chr18:9334180-9334330	GM12873	blood:	n/a	n/a
11	SIN3A	chr18:9334076-9334492	GM12878	blood:	n/a	n/a
12	MAX	chr18:9333849-9334458	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAZ	chr18:9334211-9335604	K562	blood:	n/a	n/a
14	RCOR1	chr18:9333430-9335542	IMR90	lung:	n/a	n/a
15	MYC	chr18:9334138-9334231	MCF-7	breast:	n/a	n/a
16	POLR2A	chr18:9333986-9334522	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chr18:9333838-9335197	HepG2	liver:	n/a	n/a
18	SIN3A	chr18:9333849-9335644	H1-hESC	embryonic stem cell:	n/a	chr18:9335049-9335060 chr18:9334787-9334796 chr18:9335074-9335085 chr18:9335074-9335087 chr18:9335004-9335017 chr18:9334929-9334940
19	MAX	chr18:9333739-9335451	MCF-7	breast:	n/a	n/a
20	POLR2A	chr18:9333779-9335271	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr18:9334109-9334481	PBDE	blood:	n/a	n/a
22	POLR2A	chr18:9334070-9334590	PANC-1	pancreas:	n/a	n/a
23	JUND	chr18:9334004-9334463	H1-hESC	embryonic stem cell:	n/a	n/a
24	MAX	chr18:9333792-9335442	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr18:9334217-9335396	GM18951	blood:	n/a	n/a
26	USF1	chr18:9333970-9334293	SK-N-SH_RA	brain:	n/a	chr18:9334159-9334168
27	YY1	chr18:9334150-9334464	GM12891	blood:	n/a	n/a
28	YY1	chr18:9334077-9334540	GM12878	blood:	n/a	n/a
29	MAX	chr18:9333961-9334569	A549	lung:	n/a	n/a
30	MAX	chr18:9333859-9335014	SK-N-SH	brain:	n/a	n/a
31	CREB1	chr18:9333681-9334907	H1-hESC	embryonic stem cell:	n/a	n/a
32	MAX	chr18:9334014-9335026	GM12878	blood:	n/a	n/a
33	RUNX3	chr18:9334160-9334901	GM12878	blood:	n/a	n/a
34	POLR2A	chr18:9334219-9334223	Gliobla	brain:	n/a	n/a
35	RAD21	chr18:9333766-9335406	H1-hESC	embryonic stem cell:	n/a	chr18:9335316-9335328
36	BHLHE40	chr18:9334201-9334409	K562	blood:	n/a	n/a
37	YY1	chr18:9333835-9334450	SK-N-SH_RA	brain:	n/a	n/a
38	POLR2A	chr18:9333863-9335181	HUVEC	blood vessel:	n/a	n/a
39	MAX	chr18:9333629-9335272	A549	lung:	n/a	n/a
40	POLR2A	chr18:9334210-9334467	U87	brain:	n/a	n/a
41	POLR2A	chr18:9334066-9335149	MCF-7	breast:	n/a	n/a
42	POLR2A	chr18:9333999-9335199	HepG2	liver:	n/a	n/a
43	E2F6	chr18:9334081-9334271	K562	blood:	n/a	n/a
44	TEAD4	chr18:9334035-9334614	H1-hESC	embryonic stem cell:	n/a	n/a
45	IRF1	chr18:9334223-9334839	K562	blood:	n/a	n/a
46	E2F6	chr18:9333946-9334580	A549	lung:	n/a	n/a
47	POLR2A	chr18:9334222-9335323	GM19193	blood:	n/a	n/a
48	BACH1	chr18:9334126-9334510	H1-hESC	embryonic stem cell:	n/a	n/a
49	SIN3AK20	chr18:9334113-9335460	SK-N-SH	brain:	n/a	n/a
50	CTCF	chr18:9333785-9335292	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9331992..9337338-chr18:9472584..9477624,6	MCF-7	breast:
2	chr18:8704001..8705732-chr18:9332474..9334627,2	K562	blood:
3	chr18:9137078..9139236-chr18:9332503..9334760,2	K562	blood:
4	chr18:9333428..9336571-chr18:9474335..9476989,6	MCF-7	breast:
5	chr18:8608384..8610361-chr18:9333343..9335226,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPP4R1-2	chr18:9334135-9334332	XLOC_012754
2	lnc-PPP4R1-2	chr18:9334135-9334462	XLOC_012754
3	lnc-PPP4R1-2	chr18:9334135-9334313	XLOC_012754
4	lnc-PPP4R1-2	chr18:9334135-9334439	ENSG00000264964.1

No data

Variant related genes	Relation type
TWSG1	TF binding region
ENSG00000273335	Chromatin interaction
ENSG00000017797	Chromatin interaction
ENSG00000206418	Chromatin interaction
ENSG00000168502	Chromatin interaction
ENSG00000101745	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv458023	chr18:9240413-9357786	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv576447	chr18:9240413-9357786	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv909365	chr18:9299538-9400422	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	esv3374659	chr18:9333577-9336325	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9333400-9334400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr18:9333400-9334400	Flanking Active TSS	Placenta	Placenta
3	chr18:9333400-9336400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr18:9333600-9334400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
5	chr18:9333600-9334400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr18:9333600-9334400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr18:9333600-9334400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr18:9333600-9334400	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr18:9333600-9335400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:9333600-9335400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr18:9333600-9335400	Active TSS	Duodenum Mucosa	Duodenum
12	chr18:9333600-9335400	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr18:9333600-9335400	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr18:9333600-9335400	Active TSS	Rectal Smooth Muscle	rectum
15	chr18:9333600-9335600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:9333600-9335600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:9333600-9335800	Active TSS	Esophagus	oesophagus
18	chr18:9333600-9336000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr18:9333600-9336000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr18:9333600-9336000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr18:9333600-9336000	Active TSS	A549	lung
22	chr18:9333600-9336000	Active TSS	Osteobl	bone
23	chr18:9333600-9336200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr18:9333600-9336200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr18:9333600-9336200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr18:9333600-9336200	Active TSS	NHDF-Ad	bronchial
27	chr18:9333600-9336400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr18:9333600-9336400	Active TSS	NHLF	lung
29	chr18:9333800-9334400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr18:9333800-9334400	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr18:9333800-9334400	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr18:9333800-9334400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr18:9333800-9334400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr18:9333800-9334400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr18:9333800-9334400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr18:9333800-9334400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr18:9333800-9334400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr18:9333800-9334400	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr18:9333800-9334400	Flanking Active TSS	Liver	Liver
40	chr18:9333800-9334400	Flanking Active TSS	Colonic Mucosa	Colon
41	chr18:9333800-9334400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr18:9333800-9334400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr18:9333800-9334400	Flanking Active TSS	HMEC	breast
44	chr18:9333800-9334400	Flanking Active TSS	HUVEC	blood vessel
45	chr18:9333800-9334800	Active TSS	Brain Germinal Matrix	brain
46	chr18:9333800-9335200	Active TSS	Primary hematopoietic stem cells	blood
47	chr18:9333800-9335200	Weak transcription	Fetal Heart	heart
48	chr18:9333800-9335400	Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr18:9333800-9335400	Active TSS	Primary T cells from cord blood	blood
50	chr18:9333800-9335400	Active TSS	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links