Variant report

Variant	rs374718528
Chromosome Location	chr15:74725305-74725306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74724949..74728351-chr15:74752030..74754909,4	K562	blood:
2	chr15:74676164..74677951-chr15:74723828..74725756,2	MCF-7	breast:
3	chr15:74724949..74727531-chr15:74752948..74755543,2	K562	blood:
4	chr15:74724666..74727655-chr15:74741238..74745335,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904360	chr15:74709071-74728149	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv904364	chr15:74709975-74728149	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv904367	chr15:74710125-74728149	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	nsv904368	chr15:74711122-74728149	Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv904371	chr15:74719249-74731330	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
11	esv3322653	chr15:74724424-74727272	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74720600-74725400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:74721200-74726400	Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr15:74723200-74725800	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr15:74723400-74725400	Flanking Active TSS	Thymus	Thymus
5	chr15:74723400-74726600	Active TSS	HSMMtube	muscle
6	chr15:74723600-74725400	Flanking Active TSS	Fetal Thymus	thymus
7	chr15:74723600-74726000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr15:74723600-74726200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:74724000-74725400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr15:74724000-74725400	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr15:74724200-74725600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
12	chr15:74724200-74726400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:74724200-74726400	Active TSS	Osteobl	bone
14	chr15:74724400-74725400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
15	chr15:74724400-74725400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr15:74724400-74725400	Bivalent Enhancer	Fetal Lung	lung
17	chr15:74724400-74725600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:74724400-74725800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:74724600-74725400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:74724600-74725400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr15:74724600-74725400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr15:74724600-74725400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
23	chr15:74724600-74725400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
24	chr15:74724600-74725400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
25	chr15:74724600-74725600	Enhancers	Pancreas	Pancrea
26	chr15:74724600-74725600	Flanking Bivalent TSS/Enh	Dnd41	blood
27	chr15:74724600-74726600	Active TSS	Brain Angular Gyrus	brain
28	chr15:74724600-74727000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:74724800-74725400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr15:74724800-74725400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:74724800-74725400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr15:74724800-74725400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr15:74724800-74725400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:74724800-74725400	Enhancers	Fetal Heart	heart
35	chr15:74724800-74725600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:74724800-74725600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr15:74724800-74725800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:74724800-74726000	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr15:74724800-74726400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:74724800-74726400	Active TSS	Primary T cells from cord blood	blood
41	chr15:74724800-74726400	Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr15:74724800-74726400	Active TSS	Muscle Satellite Cultured Cells	--
43	chr15:74724800-74726600	Active TSS	H9 Cell Line	embryonic stem cell
44	chr15:74724800-74726600	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr15:74724800-74726600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:74725000-74725400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:74725000-74725400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:74725000-74725400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
49	chr15:74725000-74725400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
50	chr15:74725000-74725400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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