Variant report

Variant	rs374728676
Chromosome Location	chr15:40734492-40734493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40731663..40736686-chr15:40795056..40800792,8	K562	blood:
2	chr15:40732401..40734895-chr15:40758444..40760752,2	K562	blood:
3	chr15:40731823..40734826-chr15:40760868..40766207,7	K562	blood:
4	chr15:40729975..40738939-chr15:40745780..40750666,13	K562	blood:
5	chr15:40734409..40736179-chr15:40745243..40747631,2	MCF-7	breast:
6	chr15:40732257..40736129-chr15:40757677..40760458,4	MCF-7	breast:
7	chr15:40615864..40617571-chr15:40734480..40736859,2	K562	blood:
8	chr15:40734249..40736119-chr6:28802830..28804653,2	K562	blood:
9	chr15:40731621..40739951-chr15:40753297..40765462,23	K562	blood:
10	chr15:40731794..40734704-chr15:40761511..40763222,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259330	Chromatin interaction
ENSG00000259364	Chromatin interaction
ENSG00000259536	Chromatin interaction
ENSG00000259211	Chromatin interaction
ENSG00000169105	Chromatin interaction
ENSG00000140320	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3442593	chr15:40731460-40735058	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	esv3437607	chr15:40732210-40735158	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	esv3377736	chr15:40732285-40734833	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40731200-40734800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:40731400-40736000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:40731600-40734800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr15:40731600-40735000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:40731600-40735200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:40731800-40734800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:40731800-40734800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr15:40731800-40735000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr15:40731800-40735000	Active TSS	H1 Cell Line	embryonic stem cell
10	chr15:40731800-40735000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:40731800-40735000	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr15:40731800-40735200	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr15:40732000-40734600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:40732000-40734600	Active TSS	A549	lung
15	chr15:40732000-40734800	Active TSS	K562	blood
16	chr15:40732000-40735400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:40732000-40735600	Active TSS	Brain Substantia Nigra	brain
18	chr15:40732200-40734600	Active TSS	Ovary	ovary
19	chr15:40732200-40734600	Active TSS	Pancreas	Pancrea
20	chr15:40732200-40734800	Active TSS	Aorta	Aorta
21	chr15:40732200-40734800	Active TSS	Psoas Muscle	Psoas
22	chr15:40732200-40734800	Active TSS	NHDF-Ad	bronchial
23	chr15:40732400-40734600	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr15:40732400-40734600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:40732400-40734600	Active TSS	Lung	lung
26	chr15:40732400-40734600	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr15:40732400-40734800	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr15:40732400-40734800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:40732400-40734800	Active TSS	Brain Hippocampus Middle	brain
30	chr15:40732400-40734800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:40732400-40734800	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr15:40732400-40734800	Active TSS	Right Ventricle	heart
33	chr15:40732400-40734800	Active TSS	Small Intestine	intestine
34	chr15:40732600-40734600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:40732600-40734600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:40732600-40734600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:40732600-40734600	Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr15:40732600-40734600	Active TSS	Brain Anterior Caudate	brain
39	chr15:40732600-40734600	Active TSS	Brain Cingulate Gyrus	brain
40	chr15:40732600-40734600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
41	chr15:40732600-40734600	Active TSS	Left Ventricle	heart
42	chr15:40732600-40734600	Active TSS	HepG2	liver
43	chr15:40732600-40734800	Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr15:40732600-40734800	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr15:40732600-40734800	Active TSS	Colon Smooth Muscle	Colon
46	chr15:40732600-40734800	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr15:40732600-40734800	Active TSS	Rectal Smooth Muscle	rectum
48	chr15:40732600-40735000	Active TSS	Brain Angular Gyrus	brain
49	chr15:40732600-40735000	Active TSS	Esophagus	oesophagus
50	chr15:40732600-40735000	Active TSS	Hela-S3	cervix

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