Variant report

Variant	rs374734450
Chromosome Location	chr15:73975672-73975673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr15:73975605-73976782	Hela-S3	cervix:	n/a	n/a
2	RCOR1	chr15:73975653-73976826	Hela-S3	cervix:	n/a	n/a
3	RCOR1	chr15:73975644-73976430	K562	blood:	n/a	n/a
4	SIN3AK20	chr15:73975520-73978073	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:
2	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
3	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3434440	chr15:73975149-73978997	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3341618	chr15:73975424-73978272	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
2	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
3	chr15:73971800-73976000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:73972200-73976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:73972400-73976000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:73973600-73975800	Enhancers	Osteobl	bone
8	chr15:73973600-73976000	Enhancers	Placenta	Placenta
9	chr15:73973800-73975800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:73973800-73975800	Enhancers	Hela-S3	cervix
11	chr15:73973800-73976000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:73974000-73975800	Weak transcription	Spleen	Spleen
13	chr15:73974000-73976000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:73974000-73976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:73974200-73976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:73974200-73976000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr15:73974200-73976000	Enhancers	NHDF-Ad	bronchial
18	chr15:73974200-73976200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:73974400-73976000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:73974400-73976200	Enhancers	HSMM	muscle
21	chr15:73974400-73976200	Enhancers	HSMMtube	muscle
22	chr15:73974600-73975800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:73974600-73975800	Bivalent Enhancer	HepG2	liver
24	chr15:73974600-73975800	Weak transcription	HMEC	breast
25	chr15:73974600-73976000	Enhancers	Fetal Muscle Leg	muscle
26	chr15:73974600-73976000	Weak transcription	NHEK	skin
27	chr15:73974800-73975800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:73974800-73975800	Enhancers	Adipose Nuclei	Adipose
29	chr15:73974800-73976000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:73974800-73976000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:73974800-73976000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:73974800-73976000	Enhancers	Fetal Muscle Trunk	muscle
33	chr15:73974800-73976000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:73975000-73975800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:73975000-73975800	Weak transcription	Right Ventricle	heart
36	chr15:73975000-73976000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:73975000-73976000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:73975000-73976200	Weak transcription	Left Ventricle	heart
39	chr15:73975200-73975800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:73975200-73975800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:73975200-73976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:73975400-73975800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:73975400-73975800	Weak transcription	Brain Angular Gyrus	brain
44	chr15:73975600-73975800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr15:73975600-73975800	Enhancers	Brain Hippocampus Middle	brain
46	chr15:73975600-73975800	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:73975600-73975800	Enhancers	Fetal Brain Female	brain
48	chr15:73975600-73975800	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr15:73975600-73976000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:73975600-73976000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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