Variant report

Variant	rs374745670
Chromosome Location	chr6:71999972-71999973
allele	-/TCTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr6:71997858-71999980	IMR90	lung:	n/a	n/a
2	POLR2A	chr6:71998200-72000065	MCF10A-Er-Src	breast:	n/a	n/a
3	MXI1	chr6:71997609-72000196	SK-N-SH	brain:	n/a	n/a
4	CEBPB	chr6:71999833-72000643	Hela-S3	cervix:	n/a	chr6:72000467-72000478

Variant related genes	Relation type
OGFRL1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795873	chr6:71997278-72005794	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1841286	chr6:71997278-72006512	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3424106	chr6:71997456-72000004	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1802752	chr6:71998480-72005794	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71997000-72002000	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr6:71997200-72000400	Active TSS	A549	lung
3	chr6:71997400-72000000	Active TSS	Rectal Smooth Muscle	rectum
4	chr6:71997400-72000400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:71997600-72000000	Active TSS	Brain Germinal Matrix	brain
6	chr6:71997600-72000200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr6:71997600-72001400	Active TSS	Brain Substantia Nigra	brain
8	chr6:71997800-72000800	Active TSS	HSMMtube	muscle
9	chr6:71997800-72002000	Active TSS	Brain Cingulate Gyrus	brain
10	chr6:71997800-72003000	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr6:71998000-72000000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:71998000-72000000	Active TSS	Fetal Stomach	stomach
13	chr6:71998000-72000400	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr6:71998000-72000600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:71998000-72002200	Active TSS	Brain Angular Gyrus	brain
16	chr6:71998200-72000400	Active TSS	HMEC	breast
17	chr6:71998200-72000600	Active TSS	Fetal Thymus	thymus
18	chr6:71998200-72002200	Active TSS	GM12878-XiMat	blood
19	chr6:71998400-72000400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:71999000-72000000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:71999000-72000000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr6:71999000-72000800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr6:71999000-72002000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:71999200-72000000	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr6:71999200-72000200	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr6:71999200-72003600	Weak transcription	Spleen	Spleen
27	chr6:71999200-72003800	Weak transcription	Gastric	stomach
28	chr6:71999200-72003800	Weak transcription	Ovary	ovary
29	chr6:71999400-72000000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:71999400-72000000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:71999400-72000000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:71999400-72000000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:71999400-72000000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:71999400-72000000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr6:71999400-72000000	Flanking Active TSS	Placenta	Placenta
36	chr6:71999400-72000000	Flanking Active TSS	Psoas Muscle	Psoas
37	chr6:71999400-72000000	Flanking Active TSS	NHEK	skin
38	chr6:71999400-72000200	Enhancers	Fetal Heart	heart
39	chr6:71999400-72000200	Flanking Active TSS	Hela-S3	cervix
40	chr6:71999400-72000200	Flanking Active TSS	HUVEC	blood vessel
41	chr6:71999400-72000400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:71999400-72000600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:71999400-72000800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr6:71999400-72001000	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr6:71999400-72001800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:71999400-72002000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr6:71999600-72000000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr6:71999600-72000000	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:71999600-72000000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:71999600-72000000	Active TSS	Fetal Brain Female	brain

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