Variant report

Variant	rs3747532
Chromosome Location	chr9:14722477-14722478
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10118242	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10118290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10810226	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10961683	0.85[ASN][1000 genomes]
rs1494350	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1494351	1.00[CHB][hapmap];0.92[YRI][hapmap];0.93[ASN][1000 genomes]
rs1494360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2088042	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3819004	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs55767914	0.86[ASN][1000 genomes]
rs60957653	0.86[ASN][1000 genomes]
rs7022304	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1025566	chr9:14687088-14791199	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv933345	chr9:14695436-14750474	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv892614	chr9:14712257-14756969	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14716800-14722600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:14717800-14746200	Weak transcription	Pancreas	Pancrea
3	chr9:14719400-14723200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:14720200-14723000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr9:14721600-14722800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr9:14721800-14723000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr9:14722000-14722600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr9:14722000-14722600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:14722000-14722800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr9:14722000-14722800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:14722200-14722600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:14722200-14722600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr9:14722200-14722600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:14722400-14722600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr9:14722400-14722600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
16	chr9:14722400-14722600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:14722400-14722600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
18	chr9:14722400-14722600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
19	chr9:14722400-14723600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr9:14722400-14723800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:14722400-14724000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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