Variant report

Variant	rs37482
Chromosome Location	chr5:89841346-89841347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:89821919..89824561-chr5:89840686..89844146,3	MCF-7	breast:
2	chr5:89831265..89835125-chr5:89838183..89842442,4	K562	blood:
3	chr5:89823936..89826632-chr5:89839276..89841798,3	K562	blood:
4	chr5:89710050..89711886-chr5:89838920..89841759,2	K562	blood:
5	chr5:89841281..89844094-chr5:89853363..89855965,3	K562	blood:
6	chr5:89824636..89834797-chr5:89838005..89846568,18	MCF-7	breast:
7	chr5:89840526..89842631-chr5:89848725..89851001,2	K562	blood:
8	chr5:89824371..89827324-chr5:89840412..89843071,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000176018	Chromatin interaction
ENSG00000164199	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11952742	0.84[LWK][hapmap]
rs1344030	0.84[LWK][hapmap]
rs154562	0.89[AMR][1000 genomes]
rs154563	0.81[JPT][hapmap]
rs154571	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16868901	0.84[LWK][hapmap]
rs171629	0.91[AMR][1000 genomes]
rs173660	0.93[MEX][hapmap];0.91[AMR][1000 genomes]
rs189691	0.87[AMR][1000 genomes]
rs2247158	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs250367	0.93[MEX][hapmap];0.91[AMR][1000 genomes]
rs2562523	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257855	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs27202	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27601	0.83[CEU][hapmap];0.81[GIH][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs27602	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27657	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs37480	0.83[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs40205	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916807	0.81[LWK][hapmap]
rs4916809	0.82[ASW][hapmap]
rs58598764	0.81[AMR][1000 genomes]
rs7707357	0.84[LWK][hapmap]
rs7709691	0.87[LWK][hapmap]
rs7722900	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs950692	0.91[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv882365	chr5:89770768-89882618	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv882366	chr5:89826726-89894564	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89826200-89842800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:89826800-89843200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:89839200-89842800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:89839200-89843000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:89839400-89844200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:89839600-89843000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:89840000-89842200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:89840000-89842200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:89840200-89842200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:89840400-89842200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:89840400-89845200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:89840800-89841600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:89840800-89845800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:89841200-89841400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:89841200-89842200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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