Variant report

Variant	rs374834280
Chromosome Location	chr2:37236002-37236003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37219829..37222181-chr2:37235362..37237238,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv581471	chr2:37213186-37257386	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv581472	chr2:37235324-37291320	Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37195200-37252800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:37195400-37248600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
4	chr2:37211400-37238200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:37214200-37248400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:37216000-37239800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:37219200-37256400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:37220000-37239600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:37221000-37307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:37223200-37236200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:37223400-37282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:37223400-37300400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr2:37224000-37238600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr2:37224000-37256000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:37224000-37270600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:37224400-37236600	Strong transcription	Left Ventricle	heart
17	chr2:37224600-37248200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:37225200-37239800	Weak transcription	Colonic Mucosa	Colon
19	chr2:37225400-37237000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:37225400-37238800	Strong transcription	Fetal Muscle Leg	muscle
21	chr2:37226200-37237600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:37226400-37236200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:37226600-37236200	Strong transcription	Placenta	Placenta
24	chr2:37226800-37256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:37227400-37239600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:37227800-37246000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:37228000-37247200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:37228600-37237000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:37228600-37240600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr2:37228600-37267000	Weak transcription	Stomach Mucosa	stomach
31	chr2:37229800-37251200	Weak transcription	K562	blood
32	chr2:37230000-37239800	Weak transcription	Esophagus	oesophagus
33	chr2:37230000-37242000	Weak transcription	A549	lung
34	chr2:37230400-37238200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:37230400-37239600	Weak transcription	Gastric	stomach
36	chr2:37230400-37239800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr2:37230400-37245600	Weak transcription	Spleen	Spleen
38	chr2:37230400-37248400	Weak transcription	Right Ventricle	heart
39	chr2:37230600-37239600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:37230800-37238200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:37230800-37239800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr2:37230800-37248200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr2:37231400-37238600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr2:37231400-37239800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr2:37231600-37236200	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr2:37231800-37239800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:37231800-37240000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr2:37232200-37236200	Strong transcription	Brain Hippocampus Middle	brain
49	chr2:37232600-37239200	Weak transcription	Brain Anterior Caudate	brain
50	chr2:37232600-37248200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links