Variant report

Variant	rs374885245
Chromosome Location	chr11:59131016-59131017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:59131003-59131053	HRPEpiC	eye:	n/a
2	chr11:59131003-59131053	AG10803	skin:	n/a
3	chr11:59131003-59131053	ovcar-3	ovarian:	n/a
4	chr11:59131003-59131053	Hepatocyte	liver:	n/a
5	chr11:59131003-59131053	GM12878	blood:	n/a
6	chr11:59131003-59131053	MCF-7	breast:	n/a
7	chr11:59131003-59131053	AG04450	lung:	fetal
8	chr11:59131003-59131053	ECC-1	luminal epithelium:	n/a
9	chr11:59131003-59131053	HRE	kidney:	n/a
10	chr11:59131003-59131053	RPTEC	kidney:	n/a
11	chr11:59131003-59131053	AG09319	gingival:	n/a
12	chr11:59131003-59131053	HUVEC	blood vessel:	n/a
13	chr11:59131003-59131053	HEK293	kidney:	embryo
14	chr11:59131003-59131053	GM06990	blood:	n/a
15	chr11:59131003-59131053	NHDF-neo	bronchial:	n/a
16	chr11:59131003-59131053	NT2-D1	testis:	n/a
17	chr11:59131003-59131053	CMK	blood:	n/a
18	chr11:59131003-59131053	SK-N-MC	brain:	n/a
19	chr11:59131003-59131053	HEEpiC	esophagus:	n/a
20	chr11:59131003-59131053	AG04449	skin:	fetal
21	chr11:59131003-59131053	HRCEpiC	kidney:	n/a
22	chr11:59131003-59131053	A549	lung:	n/a
23	chr11:59131003-59131053	HMEC	breast:	n/a
24	chr11:59131003-59131053	Caco-2	colon:	n/a
25	chr11:59131003-59131053	HAEpiC	amniotic membrane:	n/a
26	chr11:59131003-59131053	HPAEpiC	pulmonary alveolar:	n/a
27	chr11:59131003-59131053	K562	blood:	n/a
28	chr11:59131003-59131053	HCM	heart:	n/a
29	chr11:59131003-59131053	PANC-1	pancreas:	n/a
30	chr11:59131003-59131053	HNPCEpiC	eye:	n/a
31	chr11:59131003-59131053	ProgFib	skin:	n/a
32	chr11:59131003-59131053	BJ	skin:	n/a
33	chr11:59131003-59131053	PFSK-1	brain:	n/a
34	chr11:59131003-59131053	GM12891	blood:	n/a
35	chr11:59131003-59131053	T-47D	breast:	n/a
36	chr11:59131003-59131053	NB4	blood:	n/a
37	chr11:59131003-59131053	MCF10A-Er-Src	breast:	n/a
38	chr11:59131003-59131053	U87	brain:	n/a
39	chr11:59131003-59131053	HepG2	liver:	n/a
40	chr11:59131003-59131053	HCPEpiC	choroid plexus:	n/a
41	chr11:59131003-59131053	GM19239	blood:	n/a
42	chr11:59131003-59131053	Jurkat	blood:	n/a
43	chr11:59131003-59131053	SKMC	muscle:	n/a
44	chr11:59131003-59131053	GM12892	blood:	n/a
45	chr11:59131003-59131053	NHBE	bronchial:	n/a
46	chr11:59131003-59131053	HL-60	blood:	n/a
47	chr11:59131003-59131053	AoSMC	blood vessel:	n/a
48	chr11:59131003-59131053	PrEC	prostate:	n/a
49	chr11:59131003-59131053	SAEC	small airway:	n/a
50	chr11:59131003-59131053	HIPEpiC	eye:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59123282..59125322-chr11:59129227..59131831,2	K562	blood:

No data

Variant related genes	Relation type
OR5AN1	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv541052	chr11:59119390-59185103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039690	chr11:59124719-59178832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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