Variant report

Variant	rs374906553
Chromosome Location	chr2:179352153-179352154
allele	-/TTTTCTTTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179349410..179352916-chr2:179365424..179367731,3	K562	blood:
2	chr2:179349895..179352198-chr2:179353151..179354853,2	K562	blood:
3	chr2:179350884..179353193-chr2:179359451..179361135,2	K562	blood:
4	chr2:179350604..179352787-chr2:179436385..179438002,2	K562	blood:
5	chr2:179314559..179318357-chr2:179349274..179354131,4	K562	blood:
6	chr2:179343119..179348103-chr2:179349634..179353347,6	MCF-7	breast:
7	chr2:179343596..179347603-chr2:179348406..179354533,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204311	Chromatin interaction
ENSG00000079150	Chromatin interaction
ENSG00000116095	Chromatin interaction
ENSG00000180228	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv834468	chr2:179351116-179533625	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179346000-179355800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:179346400-179355800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:179346400-179358600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:179346400-179387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:179346600-179356200	Weak transcription	Colonic Mucosa	Colon
6	chr2:179346600-179358600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:179347200-179354400	Weak transcription	Placenta	Placenta
8	chr2:179347200-179355800	Weak transcription	HMEC	breast
9	chr2:179347200-179356000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:179347200-179356000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:179347200-179358600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:179347200-179358600	Weak transcription	NHEK	skin
13	chr2:179347200-179358800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:179347400-179354600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr2:179347400-179355200	Weak transcription	Fetal Thymus	thymus
16	chr2:179347400-179356000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr2:179347400-179356000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:179347400-179363000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr2:179347400-179369400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:179347600-179356000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:179347600-179356000	Weak transcription	Fetal Kidney	kidney
22	chr2:179347600-179358400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr2:179347600-179358600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:179347600-179371000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr2:179347800-179353000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:179347800-179355200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr2:179348000-179354000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr2:179348000-179356000	Weak transcription	Thymus	Thymus
29	chr2:179348800-179355800	Weak transcription	Spleen	Spleen
30	chr2:179349600-179355000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:179349600-179358600	Weak transcription	Esophagus	oesophagus
32	chr2:179349600-179361200	Strong transcription	Primary T cells from cord blood	blood
33	chr2:179349800-179354400	Weak transcription	GM12878-XiMat	blood
34	chr2:179349800-179354800	Weak transcription	Left Ventricle	heart
35	chr2:179349800-179355200	Weak transcription	HSMMtube	muscle
36	chr2:179349800-179355400	Weak transcription	NHLF	lung
37	chr2:179349800-179356000	Weak transcription	Aorta	Aorta
38	chr2:179349800-179356000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr2:179349800-179356000	Weak transcription	Ovary	ovary
40	chr2:179349800-179356000	Weak transcription	Psoas Muscle	Psoas
41	chr2:179349800-179356000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr2:179349800-179356000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr2:179349800-179357400	Weak transcription	HUVEC	blood vessel
44	chr2:179349800-179358600	Weak transcription	Brain Angular Gyrus	brain
45	chr2:179349800-179358600	Weak transcription	Gastric	stomach
46	chr2:179349800-179360400	Weak transcription	Fetal Heart	heart
47	chr2:179349800-179364200	Weak transcription	Hela-S3	cervix
48	chr2:179350000-179354800	Weak transcription	NHDF-Ad	bronchial
49	chr2:179350000-179358600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:179350200-179352800	Strong transcription	Primary monocytes fromperipheralblood	blood

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