Variant report

Variant	rs374910345
Chromosome Location	chr7:55951810-55951811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr7:55951587-55951843	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:55951773-55951823	IMR90	lung:	fetal
2	chr7:55951773-55951823	GM12891	blood:	n/a
3	chr7:55951773-55951823	HCT-116	colon:	n/a
4	chr7:55951773-55951823	BJ	skin:	n/a
5	chr7:55951773-55951823	HepG2	liver:	n/a
6	chr7:55951773-55951823	SKMC	muscle:	n/a
7	chr7:55951773-55951823	NHDF-neo	bronchial:	n/a
8	chr7:55951773-55951823	NH-A	brain:	n/a
9	chr7:55951773-55951823	HCF	heart:	n/a
10	chr7:55951773-55951823	GM19239	blood:	n/a
11	chr7:55951773-55951823	U87	brain:	n/a
12	chr7:55951773-55951823	ovcar-3	ovarian:	n/a
13	chr7:55951773-55951823	Caco-2	colon:	n/a
14	chr7:55951773-55951823	MCF10A-Er-Src	breast:	n/a
15	chr7:55951773-55951823	HCPEpiC	choroid plexus:	n/a
16	chr7:55951773-55951823	HEEpiC	esophagus:	n/a
17	chr7:55951773-55951823	Jurkat	blood:	n/a
18	chr7:55951773-55951823	ProgFib	skin:	n/a
19	chr7:55951773-55951823	HAEpiC	amniotic membrane:	n/a
20	chr7:55951773-55951823	PANC-1	pancreas:	n/a
21	chr7:55951773-55951823	Hepatocyte	liver:	n/a
22	chr7:55951773-55951823	HRE	kidney:	n/a
23	chr7:55951773-55951823	AG09309	skin:	n/a
24	chr7:55951773-55951823	AG09319	gingival:	n/a
25	chr7:55951773-55951823	HPAEpiC	pulmonary alveolar:	n/a
26	chr7:55951773-55951823	GM12892	blood:	n/a
27	chr7:55951773-55951823	Hela-S3	cervix:	n/a
28	chr7:55951773-55951823	HL-60	blood:	n/a
29	chr7:55951773-55951823	NB4	blood:	n/a
30	chr7:55951773-55951823	HRPEpiC	eye:	n/a
31	chr7:55951773-55951823	AG04450	lung:	fetal
32	chr7:55951773-55951823	CMK	blood:	n/a
33	chr7:55951773-55951823	AoSMC	blood vessel:	n/a
34	chr7:55951773-55951823	SAEC	small airway:	n/a
35	chr7:55951773-55951823	SK-N-SH	brain:	n/a
36	chr7:55951773-55951823	GM12878	blood:	n/a
37	chr7:55951773-55951823	A549	lung:	n/a
38	chr7:55951773-55951823	MCF-7	breast:	n/a
39	chr7:55951773-55951823	GM06990	blood:	n/a
40	chr7:55951773-55951823	RPTEC	kidney:	n/a
41	chr7:55951773-55951823	PrEC	prostate:	n/a
42	chr7:55951773-55951823	NT2-D1	testis:	n/a
43	chr7:55951773-55951823	HEK293	kidney:	embryo
44	chr7:55951773-55951823	T-47D	breast:	n/a
45	chr7:55951773-55951823	SK-N-SH_RA	brain:	n/a
46	chr7:55951773-55951823	BE2_C	brain:	n/a
47	chr7:55951773-55951823	ECC-1	luminal epithelium:	n/a
48	chr7:55951773-55951823	LNCaP	prostate:	n/a
49	chr7:55951773-55951823	PFSK-1	brain:	n/a
50	chr7:55951773-55951823	H1-hESC	embryonic stem cell:	embryo

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:55950858..55953466-chr7:56031371..56033728,2	K562	blood:
2	chr7:55950610..55953482-chr7:55955166..55956775,2	K562	blood:

No data

Variant related genes	Relation type
ZNF713	TF binding region
ENSG00000249773	TF binding region
ZNF713	CpG island
ENSG00000249773	CpG island
ENSG00000146729	Chromatin interaction
ENSG00000178665	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv427782	chr7:55703073-56010314	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
8	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
10	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
12	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
13	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
14	esv3373374	chr7:55949658-55953856	Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:55951800-55952000	ZNF genes & repeats	Spleen	Spleen

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