Variant report

Variant	rs374927733
Chromosome Location	chr6:11557106-11557107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11552654..11554519-chr6:11555824..11557962,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1015234	chr6:11545582-11583516	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv3358459	chr6:11555191-11557739	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3487381	chr6:11555391-11557414	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11540600-11566600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:11548000-11566600	Weak transcription	Placenta	Placenta
3	chr6:11548200-11565800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:11551600-11566600	Weak transcription	Aorta	Aorta
5	chr6:11552800-11566800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:11553200-11565000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:11553400-11565800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:11553400-11566600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:11553400-11566800	Weak transcription	Gastric	stomach
10	chr6:11553400-11567000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:11556000-11557400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:11556400-11557200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:11556400-11557200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:11556400-11557400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:11556400-11557400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:11556400-11557400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:11556400-11557400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:11556400-11557400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:11556400-11557400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:11556400-11568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:11556600-11557200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:11556600-11557200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:11556600-11557200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:11556600-11557200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:11556600-11557200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:11556600-11557400	Enhancers	H9 Cell Line	embryonic stem cell
27	chr6:11556600-11557400	Genic enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:11556800-11557400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:11556800-11557400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:11556800-11566800	Weak transcription	Lung	lung
31	chr6:11556800-11571600	Weak transcription	Ovary	ovary
32	chr6:11557000-11557400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:11557000-11565000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:11557000-11575600	Weak transcription	Spleen	Spleen

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