The 2.0 version of rSNPBase

Variant report

Variant rs3749299
Chromosome Location chr3:111673147-111673148
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111631000-111673400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr3:111637200-111690600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr3:111639200-111675400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr3:111642200-111674400 Weak transcription Lung lung
5 chr3:111642200-111690400 Weak transcription Spleen Spleen
6 chr3:111645400-111689600 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr3:111648600-111674800 Weak transcription Psoas Muscle Psoas
8 chr3:111652400-111685800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr3:111653000-111686200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr3:111654400-111695000 Strong transcription Placenta Placenta
11 chr3:111656600-111673200 Weak transcription Stomach Mucosa stomach
12 chr3:111656600-111674600 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr3:111656600-111679200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr3:111657200-111682000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr3:111657800-111674600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr3:111658000-111673200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr3:111658600-111697400 Weak transcription Gastric stomach
18 chr3:111658800-111685800 Weak transcription HepG2 liver
19 chr3:111661000-111676000 Weak transcription Duodenum Mucosa Duodenum
20 chr3:111661600-111689800 Weak transcription Ovary ovary
21 chr3:111663000-111681400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr3:111663200-111675200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr3:111663800-111681200 Strong transcription NHEK skin
24 chr3:111664000-111673400 Strong transcription HMEC breast
25 chr3:111665800-111675400 Weak transcription Right Atrium heart
26 chr3:111666600-111675200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr3:111666600-111697400 Weak transcription Esophagus oesophagus
28 chr3:111667000-111675400 Strong transcription HSMM muscle
29 chr3:111667200-111675200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr3:111670800-111685000 Strong transcription Liver Liver
31 chr3:111671000-111673400 Strong transcription Fetal Muscle Trunk muscle
32 chr3:111671000-111673400 Strong transcription Stomach Smooth Muscle stomach
33 chr3:111671000-111673800 Strong transcription Hela-S3 cervix
34 chr3:111671000-111674400 Strong transcription Fetal Adrenal Gland Adrenal Gland
35 chr3:111671000-111681800 Strong transcription NH-A brain
36 chr3:111671200-111680800 Weak transcription A549 lung
37 chr3:111671400-111673200 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr3:111671400-111673400 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr3:111671400-111673800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr3:111671400-111674600 Strong transcription HSMMtube muscle
41 chr3:111671400-111675000 Strong transcription Fetal Muscle Leg muscle
42 chr3:111671400-111675200 Weak transcription Brain Inferior Temporal Lobe brain
43 chr3:111671800-111673800 Enhancers iPS-18 Cell Line embryonic stem cell
44 chr3:111672000-111673800 Enhancers ES-I3 Cell Line embryonic stem cell
45 chr3:111672000-111675400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr3:111672200-111673400 Enhancers Fetal Heart heart
47 chr3:111672200-111673600 Enhancers iPS-20b Cell Line embryonic stem cell
48 chr3:111672200-111674000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
49 chr3:111672400-111673600 Enhancers HUES48 Cell Line embryonic stem cell
50 chr3:111672400-111673800 Enhancers H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015