Variant report

Variant	rs374996171
Chromosome Location	chr8:126440833-126440834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr8:126440829-126443161	IMR90	lung:	n/a	n/a
2	POLR2A	chr8:126440811-126453303	HCT-116	colon:	n/a	n/a
3	HCFC1	chr8:126440831-126445417	Hela-S3	cervix:	n/a	n/a
4	SPI1	chr8:126440830-126450368	HL-60	blood:	n/a	chr8:126442178-126442191 chr8:126446093-126446100 chr8:126443704-126443711 chr8:126447275-126447288 chr8:126443789-126443798
5	CTCF	chr8:126440805-126445236	A549	lung:	n/a	chr8:126442233-126442246 chr8:126444442-126444460 chr8:126444444-126444457 chr8:126441896-126441909 chr8:126444437-126444458
6	REST	chr8:126440825-126451296	HL-60	blood:	n/a	chr8:126443511-126443524 chr8:126441814-126441834 chr8:126442772-126442785 chr8:126443514-126443527 chr8:126444327-126444340 chr8:126442059-126442077

No.	Distal block	Cell Line	Cell type
1	chr8:126409326..126412304-chr8:126440467..126442135,2	MCF-7	breast:
2	chr8:126289014..126291245-chr8:126440114..126442015,2	MCF-7	breast:
3	chr8:126361514..126365167-chr8:126440219..126443605,3	K562	blood:
4	chr8:126392836..126396701-chr8:126439754..126442098,3	MCF-7	breast:
5	chr8:126440357..126442550-chr8:126518210..126520213,2	K562	blood:
6	chr8:126136568..126138069-chr8:126439799..126441480,2	MCF-7	breast:
7	chr8:126367782..126370387-chr8:126440468..126442210,2	K562	blood:
8	chr8:126112294..126114961-chr8:126440449..126443868,3	MCF-7	breast:
9	chr8:126439520..126441495-chr8:126640041..126642897,2	MCF-7	breast:
10	chr8:126126335..126143313-chr8:126439680..126445836,35	MCF-7	breast:
11	chr8:126412879..126414831-chr8:126440456..126442134,2	MCF-7	breast:
12	chr8:126123096..126125735-chr8:126439490..126442539,3	MCF-7	breast:
13	chr8:126439858..126442559-chr8:126576058..126577661,2	MCF-7	breast:
14	chr8:126194440..126196761-chr8:126440520..126442418,2	MCF-7	breast:

Variant related genes	Relation type
TRIB1	TF binding region
ENSG00000156831	Chromatin interaction
ENSG00000254431	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366048	chr8:126440820-126444518	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126423400-126441200	Weak transcription	Right Atrium	heart
2	chr8:126430400-126441000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:126433000-126441200	Weak transcription	HMEC	breast
4	chr8:126435400-126441200	Weak transcription	GM12878-XiMat	blood
5	chr8:126436000-126441200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:126436200-126441000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr8:126436400-126441200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:126436800-126441400	Weak transcription	Ovary	ovary
9	chr8:126438200-126441000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:126438200-126441000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:126438200-126441200	Enhancers	Colonic Mucosa	Colon
12	chr8:126438200-126441200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr8:126438400-126441200	Weak transcription	Lung	lung
14	chr8:126438600-126441200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:126438600-126441200	Weak transcription	Left Ventricle	heart
16	chr8:126438800-126441200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:126438800-126441200	Enhancers	Hela-S3	cervix
18	chr8:126438800-126441400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:126438800-126441400	Weak transcription	Liver	Liver
20	chr8:126439000-126441200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr8:126439000-126441400	Enhancers	Fetal Thymus	thymus
22	chr8:126439200-126441200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr8:126439200-126441400	Weak transcription	Esophagus	oesophagus
24	chr8:126439400-126441200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:126439400-126441200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:126439400-126441200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:126439600-126441000	Weak transcription	Fetal Intestine Large	intestine
28	chr8:126439600-126441000	Weak transcription	Fetal Intestine Small	intestine
29	chr8:126439600-126441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr8:126439600-126441200	Weak transcription	Adipose Nuclei	Adipose
31	chr8:126439600-126441200	Weak transcription	Brain Hippocampus Middle	brain
32	chr8:126439800-126441000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:126439800-126441000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:126439800-126441000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:126439800-126441000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:126439800-126441000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr8:126439800-126441000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:126439800-126441000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr8:126439800-126441000	Weak transcription	Brain Germinal Matrix	brain
40	chr8:126439800-126441000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:126439800-126441000	Weak transcription	Fetal Brain Female	brain
42	chr8:126439800-126441000	Weak transcription	Fetal Stomach	stomach
43	chr8:126439800-126441000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr8:126439800-126441000	Weak transcription	Stomach Mucosa	stomach
45	chr8:126439800-126441000	Enhancers	A549	lung
46	chr8:126439800-126441000	Weak transcription	NH-A	brain
47	chr8:126439800-126441200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr8:126439800-126441200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:126439800-126441200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr8:126439800-126441200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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