Variant report

Variant	rs3750670
Chromosome Location	chr10:6182251-6182252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr10:6182245-6182567	H1-hESC	embryonic stem cell:	n/a	n/a
2	ELF1	chr10:6182101-6182921	GM12878	blood:	n/a	chr10:6182623-6182632
3	TEAD4	chr10:6182171-6182629	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6181525..6183322-chr10:6221078..6223708,2	MCF-7	breast:
2	chr10:6060947..6063701-chr10:6181512..6183483,2	K562	blood:
3	chr10:6171947..6174676-chr10:6182111..6184339,3	MCF-7	breast:
4	chr10:6171306..6174580-chr10:6176089..6182503,5	MCF-7	breast:
5	chr10:6180971..6185195-chr10:6203384..6207419,4	MCF-7	breast:
6	chr10:6179137..6182411-chr10:6242546..6245142,3	MCF-7	breast:

No data

Variant related genes	Relation type
PFKFB3	TF binding region
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3750668	0.85[AMR][1000 genomes]
rs41295141	0.86[AMR][1000 genomes]
rs41295145	0.89[AMR][1000 genomes]
rs41295357	0.89[AMR][1000 genomes]
rs61839727	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894816	chr10:6173416-6190343	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6171400-6183200	Weak transcription	Right Atrium	heart
2	chr10:6172200-6182800	Weak transcription	Brain Angular Gyrus	brain
3	chr10:6176600-6185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:6179000-6182400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:6179400-6182400	Weak transcription	NHLF	lung
6	chr10:6179400-6182600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:6180600-6183400	Weak transcription	Esophagus	oesophagus
8	chr10:6181200-6182400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:6181600-6182400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:6181600-6182600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:6181600-6182800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:6181600-6183200	Enhancers	Fetal Thymus	thymus
13	chr10:6181600-6183600	Enhancers	Spleen	Spleen
14	chr10:6181600-6184000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:6181800-6182400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:6181800-6182400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:6181800-6183600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:6182000-6182400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr10:6182000-6182400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:6182000-6182400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr10:6182000-6182400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:6182000-6182400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr10:6182000-6182400	Enhancers	Adipose Nuclei	Adipose
24	chr10:6182000-6182400	Enhancers	Thymus	Thymus
25	chr10:6182000-6182400	Enhancers	HSMMtube	muscle
26	chr10:6182000-6182400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr10:6182000-6182600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:6182000-6182800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
29	chr10:6182000-6182800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:6182000-6182800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr10:6182000-6182800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:6182000-6182800	Flanking Active TSS	Dnd41	blood
33	chr10:6182000-6183000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr10:6182000-6183000	Enhancers	Primary hematopoietic stem cells	blood
35	chr10:6182000-6183200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:6182000-6183200	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr10:6182000-6183400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:6182000-6183400	Enhancers	Psoas Muscle	Psoas
39	chr10:6182000-6183600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr10:6182000-6183800	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr10:6182000-6184000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:6182000-6184400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr10:6182000-6185400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:6182200-6182400	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr10:6182200-6182400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr10:6182200-6182600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:6182200-6182600	Enhancers	Primary T cells from cord blood	blood
48	chr10:6182200-6182600	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr10:6182200-6182600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:6182200-6182600	Enhancers	HSMM	muscle

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