Variant report

Variant	rs375196509
Chromosome Location	chr7:66821200-66821201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAG3L4-1	chr7:66820858-66821373	NONHSAT121283

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv966840	chr7:66821082-66833953	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66807200-66822400	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:66808400-66822200	Weak transcription	Right Ventricle	heart
3	chr7:66809800-66822600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:66809800-66822800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:66810000-66822200	Weak transcription	Aorta	Aorta
6	chr7:66810000-66822200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:66810200-66821400	Weak transcription	Ovary	ovary
8	chr7:66810200-66821600	Weak transcription	Adipose Nuclei	Adipose
9	chr7:66810200-66821800	Weak transcription	Liver	Liver
10	chr7:66810200-66822000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:66810200-66822200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:66810200-66822800	Weak transcription	Brain Angular Gyrus	brain
13	chr7:66810200-66830400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:66811200-66822000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:66811200-66822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:66811600-66822800	Weak transcription	Brain Substantia Nigra	brain
17	chr7:66811600-66826000	Weak transcription	Psoas Muscle	Psoas
18	chr7:66813600-66821600	Weak transcription	Fetal Stomach	stomach
19	chr7:66818400-66822600	Weak transcription	Left Ventricle	heart
20	chr7:66821000-66821200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
21	chr7:66821000-66821600	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:66821000-66823200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:66821000-66823600	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr7:66821200-66822200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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