Variant report

Variant	rs375242583
Chromosome Location	chr6:38841839-38841840
allele	-/TTTCTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3436278	chr6:38841674-38842722	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38840200-38843400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:38840200-38845400	Enhancers	Fetal Thymus	thymus
3	chr6:38841000-38843800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:38841000-38844000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:38841200-38842200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:38841200-38842200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:38841200-38842200	Weak transcription	Thymus	Thymus
8	chr6:38841200-38842800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:38841200-38843400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:38841200-38843800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:38841200-38843800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:38841400-38842200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:38841400-38843800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links