Variant report

Variant	rs375261490
Chromosome Location	chr14:105445395-105445396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:105443986-105445690	HepG2	liver:	n/a	chr14:105445203-105445212 chr14:105445577-105445587
2	ZBTB7A	chr14:105444658-105445527	ECC-1	luminal epithelium:	n/a	chr14:105445059-105445068 chr14:105445194-105445205
3	MXI1	chr14:105443473-105447213	SK-N-SH	brain:	n/a	n/a
4	ZBTB7A	chr14:105443899-105445767	ECC-1	luminal epithelium:	n/a	chr14:105445059-105445068 chr14:105444093-105444100 chr14:105445194-105445205

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105397847..105399946-chr14:105442912..105445708,2	MCF-7	breast:
2	chr14:105444894..105446599-chr14:105520468..105523261,2	MCF-7	breast:
3	chr14:105440890..105445623-chr14:105485614..105489562,6	MCF-7	breast:
4	chr14:105444640..105445585-chr5:149736965..149737755,2	Hela-S3	cervix:
5	chr14:105443928..105445902-chr14:105765680..105767557,2	MCF-7	breast:
6	chr14:105329992..105332567-chr14:105443160..105445644,3	MCF-7	breast:
7	chr14:105218537..105220486-chr14:105444127..105446003,2	MCF-7	breast:
8	chr14:105444730..105447554-chr14:105478549..105481250,3	MCF-7	breast:
9	chr14:105265965..105267568-chr14:105442748..105445496,2	MCF-7	breast:
10	chr14:105445221..105446848-chr14:105764774..105767767,2	K562	blood:
11	chr14:105445145..105447583-chr14:105504457..105506627,3	MCF-7	breast:
12	chr14:105443512..105446839-chr14:105449245..105453481,5	K562	blood:
13	chr14:105444693..105446444-chr14:105485592..105488194,3	K562	blood:
14	chr14:105433937..105458439-chr14:105476653..105492775,70	MCF-7	breast:

No data

Variant related genes	Relation type
AHNAK2	TF binding region
ENSG00000185024	Chromatin interaction
ENSG00000184990	Chromatin interaction
ENSG00000166428	Chromatin interaction
ENSG00000179627	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000183484	Chromatin interaction
ENSG00000140104	Chromatin interaction
ENSG00000070814	Chromatin interaction
ENSG00000170779	Chromatin interaction
ENSG00000099814	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053591	chr14:105024558-105475931	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv542224	chr14:105024558-105475931	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
5	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
6	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
7	nsv902419	chr14:105381763-105494262	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv1049253	chr14:105384959-105471855	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv542228	chr14:105390569-105459912	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv456457	chr14:105404384-105555396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
11	nsv566141	chr14:105404384-105555396	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
12	nsv1036224	chr14:105404755-105470333	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
13	nsv902420	chr14:105410183-105494262	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
14	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
15	nsv1438	chr14:105412728-105457581	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
16	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
17	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
18	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
19	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
20	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
21	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
22	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
23	esv3355872	chr14:105443532-105446080	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
24	esv3389914	chr14:105443857-105446155	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
25	esv3403786	chr14:105443932-105446780	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
26	esv3325583	chr14:105444107-105448405	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
27	esv3339159	chr14:105444307-105445655	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105433000-105445400	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr14:105438000-105446800	Enhancers	Lung	lung
3	chr14:105439600-105445400	Enhancers	Spleen	Spleen
4	chr14:105441800-105446800	Enhancers	Fetal Heart	heart
5	chr14:105443000-105445600	Enhancers	Fetal Brain Male	brain
6	chr14:105444000-105445400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr14:105444000-105445400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr14:105444000-105445600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr14:105444200-105445400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr14:105444200-105445400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr14:105444200-105445800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr14:105444400-105445400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:105444400-105445400	Enhancers	Primary B cells from cord blood	blood
14	chr14:105444400-105445400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:105444400-105445400	Active TSS	Fetal Brain Female	brain
16	chr14:105444400-105445800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:105444400-105446000	Weak transcription	Gastric	stomach
18	chr14:105444400-105446200	Weak transcription	NHEK	skin
19	chr14:105444600-105445400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr14:105444600-105445400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:105444600-105445400	Active TSS	Brain Cingulate Gyrus	brain
22	chr14:105444600-105445400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr14:105444600-105445600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:105444600-105445600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:105444600-105445800	Enhancers	Esophagus	oesophagus
26	chr14:105444600-105446200	Weak transcription	Fetal Lung	lung
27	chr14:105444600-105446200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr14:105444600-105447400	Weak transcription	HSMMtube	muscle
29	chr14:105444600-105447600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:105444600-105448200	Weak transcription	Brain Substantia Nigra	brain
31	chr14:105444600-105448400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:105444600-105451000	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:105444800-105445400	Enhancers	Primary hematopoietic stem cells	blood
34	chr14:105444800-105446200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr14:105444800-105447800	Enhancers	Pancreas	Pancrea
36	chr14:105445000-105445400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:105445000-105445400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:105445000-105445400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:105445000-105445400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr14:105445000-105445400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:105445000-105445400	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr14:105445000-105445400	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr14:105445000-105445400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
44	chr14:105445000-105445400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:105445000-105445400	Flanking Active TSS	A549	lung
46	chr14:105445000-105445600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:105445000-105445600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:105445000-105445600	Bivalent Enhancer	Placenta	Placenta
49	chr14:105445000-105445800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:105445000-105446000	Flanking Bivalent TSS/Enh	HepG2	liver

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