Variant report

Variant	rs375266952
Chromosome Location	chr3:98847659-98847660
allele	-/CACACG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877215	chr3:98804408-98884699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999649	chr3:98815244-98947271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536664	chr3:98815244-98947271	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1009629	chr3:98846458-98903887	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98834400-98848200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:98844600-98851200	Enhancers	HSMM	muscle
3	chr3:98846800-98848000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:98846800-98848400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:98846800-98849000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:98846800-98849000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:98846800-98849000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:98846800-98849000	Enhancers	HMEC	breast
9	chr3:98846800-98849400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:98847000-98848200	Enhancers	NHLF	lung
11	chr3:98847000-98848400	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:98847000-98848800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:98847000-98848800	Enhancers	HUVEC	blood vessel
14	chr3:98847000-98849200	Enhancers	Osteobl	bone
15	chr3:98847000-98849400	Enhancers	NH-A	brain
16	chr3:98847000-98849400	Enhancers	NHDF-Ad	bronchial
17	chr3:98847200-98847800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:98847200-98847800	Enhancers	Brain Hippocampus Middle	brain
19	chr3:98847200-98848200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:98847200-98848600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:98847200-98848800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:98847200-98848800	Enhancers	NHEK	skin
23	chr3:98847200-98849400	Enhancers	HSMMtube	muscle
24	chr3:98847600-98848000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:98847600-98848000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:98847600-98848000	Enhancers	Adipose Nuclei	Adipose
27	chr3:98847600-98848400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:98847600-98848400	Enhancers	Brain Anterior Caudate	brain
29	chr3:98847600-98848400	Enhancers	Stomach Smooth Muscle	stomach

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