Variant report

Variant	rs375277
Chromosome Location	chr16:79606803-79606804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs173645	0.88[ASN][1000 genomes]
rs250159	1.00[ASN][1000 genomes]
rs250161	0.96[ASN][1000 genomes]
rs250162	1.00[ASN][1000 genomes]
rs250163	0.80[ASN][1000 genomes]
rs250167	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs30426	1.00[ASN][1000 genomes]
rs30427	0.93[ASN][1000 genomes]
rs30428	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs390512	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396982	1.00[ASN][1000 genomes]
rs39846	1.00[ASN][1000 genomes]
rs398465	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs399239	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs434626	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440271	1.00[ASN][1000 genomes]
rs450674	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs454665	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79604800-79607000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr16:79605200-79607000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr16:79605800-79607000	Enhancers	Fetal Lung	lung
4	chr16:79606400-79607000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:79606600-79607000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:79606600-79614000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:79606600-79623000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:79606800-79612800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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