Variant report

Variant	rs3752857
Chromosome Location	chr5:8057798-8057799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11134279	0.83[EUR][1000 genomes]
rs11959696	0.98[EUR][1000 genomes]
rs12518826	0.92[EUR][1000 genomes]
rs1453367	0.98[EUR][1000 genomes]
rs17196623	0.97[EUR][1000 genomes]
rs17249634	0.91[EUR][1000 genomes]
rs17249829	0.97[EUR][1000 genomes]
rs2198441	0.92[EUR][1000 genomes]
rs55717826	0.92[EUR][1000 genomes]
rs6871559	0.92[EUR][1000 genomes]
rs7700929	0.91[EUR][1000 genomes]
rs870456	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv597005	chr5:7860404-8093077	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1020991	chr5:8014412-8129558	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3752857	ROPN1L	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8047400-8058000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:8049600-8058200	Weak transcription	Fetal Brain Male	brain
3	chr5:8056400-8060800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:8056600-8059200	Enhancers	Ovary	ovary
5	chr5:8056800-8058000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:8056800-8058200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:8057200-8057800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr5:8057600-8059000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:8057600-8059000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:8057600-8059400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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