Variant report

Variant	rs375291725
Chromosome Location	chr19:37130137-37130138
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr19:37129521-37130502	K562	blood:	n/a	n/a
2	ZNF274	chr19:37129500-37130590	HepG2	liver:	n/a	n/a
3	USF1	chr19:37129720-37130181	ECC-1	luminal epithelium:	n/a	n/a
4	ZNF274	chr19:37128645-37131350	K562	blood:	n/a	n/a
5	SETDB1	chr19:37129181-37130919	U2OS	brain:	n/a	n/a
6	ZNF274	chr19:37129450-37130564	GM08714	blood:	n/a	n/a
7	ZNF143	chr19:37129775-37130145	K562	blood:	n/a	n/a
8	SETDB1	chr19:37129574-37130863	K562	blood:	n/a	n/a
9	GATA3	chr19:37129537-37130260	A549	lung:	n/a	n/a
10	ZNF274	chr19:37129379-37130830	H1-hESC	embryonic stem cell:	n/a	n/a
11	KAP1	chr19:37129577-37130498	U2OS	brain:	n/a	n/a
12	ZNF274	chr19:37129158-37130683	NT2-D1	testis:	n/a	n/a
13	GATA3	chr19:37129327-37130560	A549	lung:	n/a	n/a
14	TCF12	chr19:37129262-37130709	A549	lung:	n/a	n/a
15	ETS1	chr19:37129565-37130358	A549	lung:	n/a	n/a
16	USF1	chr19:37129479-37130269	A549	lung:	n/a	n/a
17	ZNF274	chr19:37129568-37130498	Hela-S3	cervix:	n/a	n/a
18	ZNF143	chr19:37129704-37130218	H1-hESC	embryonic stem cell:	n/a	n/a
19	KAP1	chr19:37129521-37130631	HEK293	kidney:	n/a	n/a
20	KAP1	chr19:37129507-37130411	K562	blood:	n/a	n/a
21	TCF12	chr19:37129630-37130260	A549	lung:	n/a	n/a
22	ZNF274	chr19:37129528-37130532	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
ZNF461	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37102200-37135200	ZNF genes & repeats	Fetal Brain Female	brain
3	chr19:37106800-37151000	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
5	chr19:37107000-37134800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr19:37107000-37152400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr19:37107800-37134600	ZNF genes & repeats	Brain Anterior Caudate	brain
8	chr19:37110400-37152600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:37115400-37131800	ZNF genes & repeats	Left Ventricle	heart
10	chr19:37121400-37134600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr19:37121600-37135200	ZNF genes & repeats	Brain Hippocampus Middle	brain
12	chr19:37122600-37139800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
13	chr19:37122800-37134800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr19:37124600-37134600	ZNF genes & repeats	Brain Substantia Nigra	brain
15	chr19:37124800-37155600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr19:37125000-37134600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr19:37125000-37134600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
18	chr19:37126000-37134600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr19:37126200-37134600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
20	chr19:37126200-37156200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:37126400-37136200	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr19:37127000-37134400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr19:37127000-37140000	ZNF genes & repeats	Ovary	ovary
24	chr19:37127200-37131600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr19:37127200-37131600	ZNF genes & repeats	Colon Smooth Muscle	Colon
26	chr19:37127200-37134600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
27	chr19:37127200-37134600	ZNF genes & repeats	A549	lung
28	chr19:37127200-37134800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:37127200-37141000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr19:37127200-37151000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr19:37127400-37132000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
32	chr19:37127400-37135400	ZNF genes & repeats	Dnd41	blood
33	chr19:37127600-37131600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:37127800-37131600	ZNF genes & repeats	HSMM	muscle
35	chr19:37128000-37134600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
36	chr19:37128200-37130400	ZNF genes & repeats	Placenta	Placenta
37	chr19:37128200-37130800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
38	chr19:37128200-37150600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr19:37128400-37131000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:37128400-37131600	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr19:37128400-37134800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr19:37128600-37130800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
43	chr19:37128600-37131200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
44	chr19:37128600-37131200	ZNF genes & repeats	Fetal Brain Male	brain
45	chr19:37128600-37131600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr19:37128600-37132200	Weak transcription	Lung	lung
47	chr19:37128600-37134800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr19:37128600-37149600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
49	chr19:37128800-37131600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr19:37128800-37135200	ZNF genes & repeats	Fetal Lung	lung

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