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Variant report
Variant
rs375293768
Chromosome Location
chr7:99190976-99190977
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:4)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CUX1
chr7:99190892-99191459
K562
blood:
n/a
n/a
2
FOXA2
chr7:99190773-99191116
A549
lung:
n/a
n/a
3
FOXA2
chr7:99190846-99191095
HepG2
liver:
n/a
n/a
4
FOXA1
chr7:99190770-99191171
HepG2
liver:
n/a
n/a
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr7:99190426..99192042-chr7:99199771..99201365,2
K562
blood:
2
chr7:99190213..99192042-chr7:99198834..99201365,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000244219
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv2554756
chr7:99182537-99196388
Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer
TF binding regionCpG islandChromatin interactive regionlncRNA
6 gene(s)
inside rSNPs
diseases
2
nsv824230
chr7:99190617-99194457
Weak transcription
TF binding regionChromatin interactive regionlncRNA
5 gene(s)
inside rSNPs
diseases
3
nsv821509
chr7:99190617-99194715
Weak transcription
TF binding regionChromatin interactive regionlncRNA
5 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links