Variant report

Variant	rs375298165
Chromosome Location	chr19:19789584-19789585
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19779580..19781317-chr19:19788331..19791225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181896	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3330851	chr19:19755507-19852881	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv519533	chr19:19789528-19831544	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19780200-19789800	Weak transcription	Fetal Brain Male	brain
2	chr19:19780200-19790000	Weak transcription	Fetal Heart	heart
3	chr19:19780600-19790000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr19:19780600-19795000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:19780800-19789800	Weak transcription	Psoas Muscle	Psoas
6	chr19:19780800-19790000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr19:19780800-19795000	ZNF genes & repeats	Fetal Thymus	thymus
8	chr19:19780800-19795000	ZNF genes & repeats	Thymus	Thymus
9	chr19:19781000-19789600	Weak transcription	Fetal Brain Female	brain
10	chr19:19781000-19789800	Weak transcription	Brain Substantia Nigra	brain
11	chr19:19781000-19792600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:19781200-19789800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr19:19781200-19790000	Weak transcription	Colon Smooth Muscle	Colon
14	chr19:19781200-19795800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr19:19781400-19790000	Weak transcription	Right Ventricle	heart
16	chr19:19781400-19792800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr19:19781400-19793000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
18	chr19:19781400-19793400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr19:19781600-19795000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
20	chr19:19781800-19794400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr19:19782000-19795000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:19782000-19795600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr19:19782000-19798200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr19:19782200-19789800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr19:19782200-19789800	Weak transcription	Brain Germinal Matrix	brain
26	chr19:19782600-19793800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
27	chr19:19782800-19795000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
28	chr19:19783000-19791200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
29	chr19:19783000-19791600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr19:19783000-19792200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
31	chr19:19783000-19793400	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr19:19783000-19795000	ZNF genes & repeats	Primary T cells from cord blood	blood
33	chr19:19783200-19789800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr19:19783400-19795000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr19:19783600-19790200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr19:19784800-19789800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr19:19784800-19792600	ZNF genes & repeats	GM12878-XiMat	blood
38	chr19:19784800-19792800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
39	chr19:19785000-19791200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
40	chr19:19785000-19792200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
41	chr19:19785000-19792600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr19:19785000-19792600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
43	chr19:19785000-19792600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:19785000-19792600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr19:19785000-19794000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr19:19785200-19792600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr19:19785200-19792600	ZNF genes & repeats	Liver	Liver
48	chr19:19785200-19793400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr19:19785600-19792200	ZNF genes & repeats	Fetal Intestine Large	intestine
50	chr19:19785800-19792600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

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