Variant report

Variant	rs375381178
Chromosome Location	chr3:53551249-53551250
allele	-/TTGCCTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv3434928	chr3:53550812-53554010	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3398638	chr3:53551208-53551254	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53533600-53552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:53540600-53552200	Weak transcription	Spleen	Spleen
3	chr3:53540600-53560000	Weak transcription	Pancreas	Pancrea
4	chr3:53542600-53551400	Strong transcription	Fetal Intestine Large	intestine
5	chr3:53545200-53552800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:53545400-53552800	Weak transcription	Fetal Stomach	stomach
7	chr3:53545600-53552000	Weak transcription	Lung	lung
8	chr3:53547200-53553200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:53548200-53552200	Strong transcription	Fetal Intestine Small	intestine
10	chr3:53550000-53552000	Enhancers	A549	lung
11	chr3:53550600-53551400	Strong transcription	Fetal Lung	lung
12	chr3:53550800-53552000	Enhancers	Hela-S3	cervix
13	chr3:53551200-53551400	Enhancers	Brain Hippocampus Middle	brain
14	chr3:53551200-53551400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr3:53551200-53552400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr3:53551200-53553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:53551200-53554400	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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