Variant report

Variant	rs375381259
Chromosome Location	chr6:30379217-30379218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:30379215-30379537	Spleen_OC	spleen:	n/a	n/a
2	CTCF	chr6:30379140-30379689	HCT-116	colon:	n/a	n/a
3	ZNF143	chr6:30379215-30379548	GM12878	blood:	n/a	n/a
4	CTCF	chr6:30379200-30379350	HCM	heart:	n/a	n/a
5	CTCF	chr6:30379212-30379513	Lung_OC	lung:	n/a	n/a
6	CTCF	chr6:30379208-30379577	IMR90	lung:	n/a	n/a
7	CTCF	chr6:30379174-30379564	A549	lung:	n/a	n/a
8	RAD21	chr6:30379107-30379667	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr6:30379194-30379608	SK-N-SH_RA	brain:	n/a	n/a
10	CTCF	chr6:30379137-30379518	A549	lung:	n/a	n/a
11	SMC3	chr6:30379196-30379714	SK-N-SH	brain:	n/a	n/a
12	CTCF	chr6:30379200-30379470	NHDF-neo	bronchial:	n/a	n/a
13	CTCF	chr6:30379063-30379666	K562	blood:	n/a	n/a
14	RAD21	chr6:30379217-30379539	Hela-S3	cervix:	n/a	n/a
15	CTCF	chr6:30379174-30379545	K562	blood:	n/a	n/a
16	CTCF	chr6:30379195-30379602	HepG2	liver:	n/a	n/a
17	CTCF	chr6:30379165-30379587	K562	blood:	n/a	n/a
18	CTCF	chr6:30379210-30379590	GM12878	blood:	n/a	n/a
19	CTCF	chr6:30379214-30379579	K562	blood:	n/a	n/a
20	CTCF	chr6:30379200-30379470	HAc	cerebellar:	n/a	n/a
21	CTCF	chr6:30379203-30379567	T-47D	breast:	n/a	n/a
22	CTCF	chr6:30379200-30379490	WI-38	lung:	n/a	n/a
23	CTCF	chr6:30379180-30379330	BE2_C	brain:	n/a	n/a
24	CTCF	chr6:30379120-30379270	HAc	cerebellar:	n/a	n/a
25	CTCF	chr6:30379200-30379350	A549	lung:	n/a	n/a
26	CTCF	chr6:30379024-30379762	SK-N-SH	brain:	n/a	n/a
27	CTCF	chr6:30379019-30379763	A549	lung:	n/a	n/a
28	CTCF	chr6:30379200-30379470	AG04450	lung:	n/a	n/a
29	CTCF	chr6:30379206-30379437	A549	lung:	n/a	n/a
30	CBX3	chr6:30379195-30379551	K562	blood:	n/a	n/a
31	CTCF	chr6:30379200-30379350	BE2_C	brain:	n/a	n/a
32	RAD21	chr6:30379207-30379608	HepG2	liver:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30378981..30379484-chr6:30421470..30421976,2	K562	blood:

No data

Variant related genes	Relation type
MICC	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv884064	chr6:30375290-30396173	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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