Variant report

Variant	rs3753893
Chromosome Location	chr1:165669433-165669434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10800134	0.89[ASN][1000 genomes]
rs10918256	0.81[ASN][1000 genomes]
rs12043815	0.97[ASN][1000 genomes]
rs12120652	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12240261	0.89[ASN][1000 genomes]
rs16849624	0.96[ASN][1000 genomes]
rs3753892	0.92[ASN][1000 genomes]
rs7530127	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9727222	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165668200-165671000	Weak transcription	Liver	Liver
2	chr1:165669000-165669800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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