The 2.0 version of rSNPBase

Variant report

Variant rs3753896
Chromosome Location chr1:165393753-165393754
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165378000-165399600 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:165379400-165393800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:165380400-165394000 Weak transcription Right Ventricle heart
4 chr1:165389200-165393800 Weak transcription Left Ventricle heart
5 chr1:165389400-165394000 Weak transcription Fetal Intestine Small intestine
6 chr1:165391200-165393800 Enhancers Skeletal Muscle Male skeletal muscle
7 chr1:165391400-165393800 Enhancers Skeletal Muscle Female skeletal muscle
8 chr1:165392600-165393800 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr1:165392600-165394600 Enhancers Placenta Placenta
10 chr1:165392800-165393800 Weak transcription Colonic Mucosa Colon
11 chr1:165392800-165393800 Weak transcription Esophagus oesophagus
12 chr1:165392800-165393800 Weak transcription Fetal Muscle Trunk muscle
13 chr1:165392800-165393800 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:165392800-165394000 Weak transcription Lung lung
15 chr1:165393000-165394000 Weak transcription Spleen Spleen
16 chr1:165393200-165393800 Enhancers Liver Liver
17 chr1:165393200-165394200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:165393200-165394400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
19 chr1:165393200-165394600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr1:165393200-165394600 Enhancers Primary monocytes fromperipheralblood blood
21 chr1:165393200-165394600 Enhancers Primary Natural Killer cells fromperipheralblood blood
22 chr1:165393200-165395200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:165393400-165393800 Active TSS Brain Cingulate Gyrus brain
24 chr1:165393400-165393800 Enhancers Brain Substantia Nigra brain
25 chr1:165393400-165394000 Enhancers Primary T cells from cord blood blood
26 chr1:165393400-165394000 Active TSS Primary T helper memory cells from peripheral blood 1 blood
27 chr1:165393400-165394000 Active TSS Duodenum Smooth Muscle Duodenum
28 chr1:165393400-165394200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
29 chr1:165393400-165394200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:165393400-165394200 Active TSS Brain Hippocampus Middle brain
31 chr1:165393400-165394200 Active TSS NHLF lung
32 chr1:165393400-165394400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:165393400-165394400 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
34 chr1:165393400-165394400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
35 chr1:165393400-165394400 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
36 chr1:165393400-165394600 Flanking Active TSS Adipose Nuclei Adipose
37 chr1:165393400-165394800 Flanking Active TSS Fetal Lung lung
38 chr1:165393600-165393800 Active TSS Primary mononuclear cells fromperipheralblood Blood
39 chr1:165393600-165393800 Active TSS Brain Inferior Temporal Lobe brain
40 chr1:165393600-165393800 Enhancers Psoas Muscle Psoas
41 chr1:165393600-165393800 Active TSS Osteobl bone
42 chr1:165393600-165394000 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:165393600-165394000 Active TSS Primary T helper naive cells from peripheral blood blood
44 chr1:165393600-165394000 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
45 chr1:165393600-165394000 Active TSS Primary T killer memory cells from peripheral blood blood
46 chr1:165393600-165394000 Flanking Active TSS Fetal Muscle Leg muscle
47 chr1:165393600-165394000 Active TSS Ovary ovary
48 chr1:165393600-165394000 Active TSS Right Atrium heart
49 chr1:165393600-165394000 Active TSS Stomach Smooth Muscle stomach
50 chr1:165393600-165394200 Flanking Active TSS Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015