Variant report

Variant	rs375432509
Chromosome Location	chr12:9469067-9469068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:9468966-9469286	HepG2	liver:	n/a	n/a
2	POLR2A	chr12:9466689-9469721	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000255753	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv523958	chr12:9303440-9549072	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv557355	chr12:9309995-9529015	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1035953	chr12:9314481-9544655	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
8	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv916832	chr12:9397450-9693952	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv976736	chr12:9431362-9524845	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv898740	chr12:9436446-9546962	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1050161	chr12:9436635-9685768	Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv975441	chr12:9439756-9469779	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv898741	chr12:9458525-9546962	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv3367784	chr12:9466785-9470133	Weak transcription Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv8904	chr12:9468460-9470499	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9437200-9472400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr12:9437200-9485200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:9437400-9470800	Weak transcription	Brain Germinal Matrix	brain
4	chr12:9450200-9471400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:9456200-9472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr12:9456400-9471800	Weak transcription	GM12878-XiMat	blood
7	chr12:9457400-9485800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:9458000-9472200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:9458400-9469400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr12:9463000-9479000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:9463200-9471600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:9464400-9477600	Weak transcription	Lung	lung
13	chr12:9464600-9487600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:9464800-9472200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr12:9464800-9472200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:9464800-9490000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:9465000-9469400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:9465000-9472600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr12:9465000-9473000	Weak transcription	Esophagus	oesophagus
20	chr12:9465000-9486400	Weak transcription	A549	lung
21	chr12:9465200-9471400	Weak transcription	Spleen	Spleen
22	chr12:9465400-9485200	Weak transcription	Fetal Intestine Small	intestine
23	chr12:9465600-9471000	Weak transcription	Fetal Stomach	stomach
24	chr12:9465600-9472200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:9465600-9477800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr12:9465600-9484000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr12:9465600-9488000	Weak transcription	Dnd41	blood
28	chr12:9466000-9484000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr12:9466200-9472400	Weak transcription	HMEC	breast
30	chr12:9466200-9484000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr12:9466400-9470200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr12:9466400-9471600	Weak transcription	Fetal Muscle Leg	muscle
33	chr12:9466400-9471600	Weak transcription	Fetal Thymus	thymus
34	chr12:9466400-9471800	Weak transcription	Thymus	Thymus
35	chr12:9466400-9472000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr12:9466400-9477400	Weak transcription	Fetal Lung	lung
37	chr12:9466400-9485200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr12:9466400-9487200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr12:9466400-9487600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:9466600-9470000	Weak transcription	HepG2	liver
41	chr12:9468800-9471000	Weak transcription	Fetal Muscle Trunk	muscle

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